Basic Information

Gene Symbol
-
Assembly
GCA_905333075.2
Location
HG995384.1:2707140-2708033[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.3e-09 6.6e-07 30.7 0.0 5 35 15 46 11 52 0.90

Sequence Information

Coding Sequence
ATGgaagaaacaaaaaagaaaggAAAATGGGATCAGCAAAGTTTAAAAACTGCGATGGACAAGATTTTGTCCAAAGAAATGAGTCTCAGAGAAGCTTCGTCGCGTTACAATATCCCAAAAAGCACTCTACATGATAAAATAACAGCATTGAATGGTGGAGAAGAAGTCACGTTGCAACCAAAGATTGGTAGATTTACAAACACCTTCTCACCAGAGTATGAACAAGTTTTACTAGACCACATAAAAGATTTTTCTAATAGATGTTTGCCGCTGAAGAAAAAGGAGTTTTTGAAGTTAGCTTACGACTTGGCTGAAGCTATGAAGATCCCCCATCGTTTTAATACAGAGAAAAAAACTGCTGGTAAGCATTTTTATTATGATTTCATGCATAGACATCCAGACATTTCATTGAGGACACCAGAGTCGACAAGCATGATGCGAGCCGTAGGGTTTAATAAACCACAGGTGGATATATTCTACGACAATCTGGAAAGGCTAATGACACAGTACAAATTTCCACCCTCCAACATTTACAACTGTGATGAAACTGGAGTCAGCTGTGTGCATAAACATCAAAAAGTTCTGGCTCCGAAGGCTGTCCGTCAAGTAGGAAAGCTCACTTCTGCTGAGAGGGGCAAAAATATAAcagttttgttttgtatgaGTGCTAACGGTCACTTCATACCACCCTTTTTTGTCTTTCCAAGGCAAAGAATGAATGATCGGCTCATGATTAATTCTCCGGCTGAAAGCGTTGGCGTGGCTCAGCCAAAAGGTTGGATGAATAGTGATTTTTTCTCCAATGGCTGCAGCTATTTATTAAACACTCTCACCCGACTCAAGCGAGTCCTGTGTTGCTTCTACTGGATGGCCATTGTAGCCACAAGACGCTAG
Protein Sequence
MEETKKKGKWDQQSLKTAMDKILSKEMSLREASSRYNIPKSTLHDKITALNGGEEVTLQPKIGRFTNTFSPEYEQVLLDHIKDFSNRCLPLKKKEFLKLAYDLAEAMKIPHRFNTEKKTAGKHFYYDFMHRHPDISLRTPESTSMMRAVGFNKPQVDIFYDNLERLMTQYKFPPSNIYNCDETGVSCVHKHQKVLAPKAVRQVGKLTSAERGKNITVLFCMSANGHFIPPFFVFPRQRMNDRLMINSPAESVGVAQPKGWMNSDFFSNGCSYLLNTLTRLKRVLCCFYWMAIVATRR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01056719;
90% Identity
iTF_00282240; iTF_00282237;
80% Identity
-