Acen037699.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995383.1:6787699-6797260[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9 2.9e+03 -0.1 0.3 1 12 3 14 3 16 0.87 2 2 1.4e-09 3.9e-07 31.5 0.1 1 38 98 135 98 141 0.94
Sequence Information
- Coding Sequence
- ATGTGGAGTGAAGAAGACTTACGTGCAGCTATGGCAGCTGTTACAGAAGTTGACACTGCTTTTCTGTCGTGGGTGCTTCGAGAAGTAGGTGTGCCGTATAAGCATGAAGTTGAGACTCGAGACGTTTGGTGTGCCTCCACTGTGGAAACGGCGCCGCACATGTGCCTAGACTGGGCTGTGCAACTTTGTGATCTCACTACAGCAGTTGGTGCTGCGGGTAACCTCTCGCTCCCGAGTCCCGGTCGTATAGTTGGAAATTGGATTAGATTGACTTCAGGAAGAGCAATGTGGACGGAAGAAAATTTGCACGGAGCAATGGCGGCAGTTGTTCAGGATAACATGACACAGCGCGCTGCGGCAGATCTTTATGGCATTCCTAGACAGACACTAGCTAATCACTTGTCGAAGGCAAGCATCATGAAACGAAAGGGTCGAAATTCTATCATGAACGACGCTCATGAAGCTTTCCTCGTCAACAGTAAGTTGAAAATTATTCTCGTCGCCGCGCCGTAG
- Protein Sequence
- MWSEEDLRAAMAAVTEVDTAFLSWVLREVGVPYKHEVETRDVWCASTVETAPHMCLDWAVQLCDLTTAVGAAGNLSLPSPGRIVGNWIRLTSGRAMWTEENLHGAMAAVVQDNMTQRAAADLYGIPRQTLANHLSKASIMKRKGRNSIMNDAHEAFLVNSKLKIILVAAP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -