Acen054333.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995393.1:8505909-8506238[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-10 1.9e-07 32.4 0.0 2 34 8 39 7 45 0.90
Sequence Information
- Coding Sequence
- ATGGCTGAAAAACAACACAAGCAGGAGGATATGTCAAAAGCTATAAAGGCTGTACGTCAAGGGGTCACAACATCATCTGCAGCaagaatatttaaagtgccaAGGACCACCTTCATTGAGAAAATTAAAGGCTGCGCTAAAGGACCACTCTCTGTTTTaaccaaagaagaagaaaatcatTTAAAGACTTGGTTCATTTTCATGTCAGAAAGTCGGTTCCCTGTTACCAAAGATCAGTTATTAGATAGCGTAAAATTAttagttcacaaactaaaacgTAAAACGCCATTCACAGATAACCAGGACCAGGTCGACATTACCGcggtttga
- Protein Sequence
- MAEKQHKQEDMSKAIKAVRQGVTTSSAARIFKVPRTTFIEKIKGCAKGPLSVLTKEEENHLKTWFIFMSESRFPVTKDQLLDSVKLLVHKLKRKTPFTDNQDQVDITAV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172744; iTF_00172746; iTF_00172692; iTF_00172694;
- 90% Identity
- iTF_00172744; iTF_00172746; iTF_00172694; iTF_00172692;
- 80% Identity
- iTF_00172744;