Basic Information

Insect: Atethmia centrago
Gene Symbol: -
Assembly: GCA_905333075.2
Location: HG995396.1:6036965-6043611[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.9e-10 1.1e-07 33.2 0.0 1 44 309 352 309 353 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.9e-10	1.1e-07	33.2	0.0	1	44	309	352	309	353	0.92

Sequence Information

Coding Sequence: ATGACAAAACTTGGCCGAAATCTAAACTGCATTCATCAACTTTGCTTAGCTCACGGCTTGCAACTGGCCATAGTGGATACATTTTATGCCAAATCTCTAGAAGTAACTCATTATAACGAAGCTCAAGATGAGGAggaaaatgataatgatgacgcACTTGTTATTAATGATGATGCTGGTGGATTAGAAATAGAGGAAGCGTTTTCATATGTTGAAACAAATATTCAATTCAAACCTATTATAGAGAAGGTTAGAGCAGTCGTACGATTGTTTCGAAAGTCACCTACAAAATCagatgttcttcagaaatatataaaaatggaaCTTGGCAAGGAAAACGCATTGTTGTTAGACTGCAAGACACGATGGAGCACACTATGTGATATGATAGGTAGATTCATTAAAGTAAAAGCTGCAATCTTAAAAGCTGTCATTGATGTCCAATGCGCAATTCAAATTTCGGAACAGGAGTGGTCAGTTCTTCGAGACATATATGAGAATCTTGAAATTATTAAGGTCACAGTTGAGGCCCTCTGTCGAGAAGATGCCACTCTAGTTAGTGCGGATGTTGCTACGAATTTTGCTTTAAAGAAACTTGAAGTTCGCAATACGCAACTTAGTCGGTACCTTCATACAAATCTCACAAATAGATTAAAACAAAGACGACTTCCAATTGCTAGTCTTATGCAGTACCTGCATGATCCAAACCGTTATTTTAATGACGACGAATATAATACAGATGTATACCCTCGCTTAACCAATGATCGTTTACAGGACATGATACTAAACCTTTTATCAAAGTATGGTTCTGCTGCAGTGACTGCTTTGGATGTGATTGAAGATGACCACAGTCAAGCTCATTCAAGTGACCTAGTCACTGAAATGGTGTTTAATTATAAACGCAAAACAAATCGAGCAGCATGGTCAGAAGAAACACTCGATAGAGCTGTAAGAGCTGTAAAAGATGACGGACAATCTATAAATTCAACCGCAAAAAAGTTTGGAATTCCGTTTACAACTTTGCAGAGACATGTGAAGACGGGGAATAAGTCAAAGAAATTGGGTAGGTTCACATCAGTTTTTAGTCCGGAACAAGAAGAAGAGTTGTGTTTGTATCTTAAAAAATTGGATAGTTTATTTTTTGGGCTTACTCGTTCAGATTTTTTAGAATTAGTCTATGATTATGCAACAAGAAATCATATTTCTCATCCATTTAAAAATGGCAAAGCTGGAGACGACTGGTTTTCTGGTTTCAAGCGTCGACACTCAGAAATTGTACTAAGAGCGCCAGAGCCAACATCTTTAGCAAGGACAAGAGGCTTTAATAGGCCACAGGTGGAGTTATTTTATTCCAATTATTGGAGCCTAATagaaaaatacagttttgatgCAACTACAATATATAATATGGACGAGACCGGAATAAAGAGCAGTACATCTAAAccaccgaaggttttgtctatcAAAGGCAAGAGGCAAGTCGGAGTAATATGCAGTGCAGAAAGGGGTCAATTAACCACTGTCATATGTTGTTGTAATGCAGCTGGAACGTTTGTTCCACCCTTTTTCATATTTGCGCGCAAACGTATGCAAGAACGACTTCTGGATAATGCCCCACCAGGCTCACAAGCCACCGTGACTGACAACGGTTGGATAAATGGAGAAGCTTTTTTGAATTGGTTGCAATATTTTGTTGAAAAGGTTCGTCCAAGTGAAAATAGAAAAGTTTTACTACTGCTCGATAATCATGAGTCGCATAAATTTTATCCAGCCTTAGAATTTGCATCAAAAAATCACATCATCTTTTTGTCATTTGCCCCACACACAACTGACCGGATGCAGCCTCTTGATGTGGCTGTGTATGGAcccctcaaaaaatattttgaacaaGAGTTGAATACCTTTCAAAAAATGCACCCAGACCGTATTGCAAACCAGTACGATATGGCAAAACTATTTGGGGGAGCGTACGCCAAAAGTGCTTCGGTCCAGAATGCAGTTAATGGGTTTAGAAAACCGGGAATTTGGCCCTATGATCCAAATGTTTTTGGAGACGATGATTACGCTCCGTCAACGATGACCGACCGTCCTTTTCCTGAACTACCTTCTACTATGTCTGAAGTTCCTGTAAATGATGCACCGTCGACAGTGGGCTTAGATCCTTTAAATGGCACGTCATCTACTGTGACCGTCTGTTCTTTAAGTGATTTTCCAGCAACAACAGTGACCGCAAAGGAGGCAGTAGCTGAATCTTCTACACAGTCTGTTATTTCTAAAAAAGGGATTGAAAGGTCTACTCCACCTTTGCCTAATTCCAATATACTGGAAGAAGGATCAGATCATTTACTAGGAGAAAATCATCCAGCACCTGCAGCGAGTCTTACGCCATTTCAAATCAGACCTATTCCAACTATGGCTGCTCCTAAAACAGGCCGCAAACAAAAGAGGCAGAAATCAGAGGTGTTGACGTCAACTCCCGTCAAAGCTGAGCAGGCATTAAAATTTCAGAAGGCAAATAATAAGAAGACCAAGATTTCAGAGTTAGCAGGCCCCAGCAAGATCAAAACTAAAAGACCCTCAGTCAAACAACAGGTCAAAAACCCGAAACCAGATTTTTACTGTTTAGTGTGCGCTGACAAATACACTGAACCACCAGCCGAAGATTGGATTCAGTGTAATCAATGCAAAAGTTGGGCACATGAAGACTGCACTTCTTATGTAGGAGTTGGCAGCTACTTCTGTGATGAATGCGAAGACTGA
Protein Sequence: MTKLGRNLNCIHQLCLAHGLQLAIVDTFYAKSLEVTHYNEAQDEEENDNDDALVINDDAGGLEIEEAFSYVETNIQFKPIIEKVRAVVRLFRKSPTKSDVLQKYIKMELGKENALLLDCKTRWSTLCDMIGRFIKVKAAILKAVIDVQCAIQISEQEWSVLRDIYENLEIIKVTVEALCREDATLVSADVATNFALKKLEVRNTQLSRYLHTNLTNRLKQRRLPIASLMQYLHDPNRYFNDDEYNTDVYPRLTNDRLQDMILNLLSKYGSAAVTALDVIEDDHSQAHSSDLVTEMVFNYKRKTNRAAWSEETLDRAVRAVKDDGQSINSTAKKFGIPFTTLQRHVKTGNKSKKLGRFTSVFSPEQEEELCLYLKKLDSLFFGLTRSDFLELVYDYATRNHISHPFKNGKAGDDWFSGFKRRHSEIVLRAPEPTSLARTRGFNRPQVELFYSNYWSLIEKYSFDATTIYNMDETGIKSSTSKPPKVLSIKGKRQVGVICSAERGQLTTVICCCNAAGTFVPPFFIFARKRMQERLLDNAPPGSQATVTDNGWINGEAFLNWLQYFVEKVRPSENRKVLLLLDNHESHKFYPALEFASKNHIIFLSFAPHTTDRMQPLDVAVYGPLKKYFEQELNTFQKMHPDRIANQYDMAKLFGGAYAKSASVQNAVNGFRKPGIWPYDPNVFGDDDYAPSTMTDRPFPELPSTMSEVPVNDAPSTVGLDPLNGTSSTVTVCSLSDFPATTVTAKEAVAESSTQSVISKKGIERSTPPLPNSNILEEGSDHLLGENHPAPAASLTPFQIRPIPTMAAPKTGRKQKRQKSEVLTSTPVKAEQALKFQKANNKKTKISELAGPSKIKTKRPSVKQQVKNPKPDFYCLVCADKYTEPPAEDWIQCNQCKSWAHEDCTSYVGVGSYFCDECED*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -