Acen011578.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995370.1:4756138-4756596[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-12 1.1e-09 39.7 0.0 1 40 14 53 14 56 0.94
Sequence Information
- Coding Sequence
- ATGGTCCGGAATTATAAACGAAAAACGGAAAACAAATATACCCAGGAAAACTTGTTAAAAGCTCTAGAAGATGTTAGAAGCAATAAATTAAACACCTATCAAGCAGCTGACGTCTACGGAGTTCCGAGGTCTACTTTGGTTCACCGATTACGCGGATCACGAGGAGTGGTAAAATCATATCGCGGTAGGCCTACTGTATTCACTAAATACACAGAAACAAAAATAGCCGGATATATTCACATAATGGAAAAAACTGGTTTTCCTTTAACGGTGCAAGAGGTCAAAGTTTTGATATCGGATTACATAAAAAGAAATGGCTTTATTACGCCGTTCAAAAACGACATCCCTGGCGATGACTGGTGCAAGGGGTTTAGGAGCAAAAATAAtctatcattaaaaaaaaccccaATCCGTGGAGACCGCAAGGCGAAAGGCTTGCAATCCTTTCATTGTATATAA
- Protein Sequence
- MVRNYKRKTENKYTQENLLKALEDVRSNKLNTYQAADVYGVPRSTLVHRLRGSRGVVKSYRGRPTVFTKYTETKIAGYIHIMEKTGFPLTVQEVKVLISDYIKRNGFITPFKNDIPGDDWCKGFRSKNNLSLKKTPIRGDRKAKGLQSFHCI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01025958;
- 90% Identity
- iTF_01094827; iTF_01092999; iTF_01094826;
- 80% Identity
- -