Acen039130.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995384.1:1763385-1768886[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.14 40 5.8 0.0 31 45 7 22 3 22 0.91 2 2 7.1e-18 2.1e-15 58.0 0.0 1 42 29 71 29 73 0.95
Sequence Information
- Coding Sequence
- ATGGTATCAATATTTGCAGGAACACTGTATGGTCGGTGTAAACGAGAAGGCATCGAGCTGTCTCGATCTAACCCCACGCCGTGGTCTGAAGATGCCATGGGCGAAGCACTCGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCGATCCATTACAACCTGCCGTACTCCTCACTCTACGGCAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCACAAAATCAGCACCAACAACAGCAAGATCTCCACAAAATGGCGCAAGAGCACCAACCGCACGAGGTGCAACAGTACTACCACCAGGTACCATCCCAGCAGGAACCAGACCCGCACACATACGTCCACGTGCACGAATACACTCACCAAGACCATGGCGCTGCGAAATCTCTTAAACGAGAGTGTCCTTTGTCAGTCTGCGGCATCCGAGCGAGGGGCGGGGACGCCACGGCCGCACCTCTTAACACTAGTTACGTATATGTTGTGCGCGGGGACACGCTAGGACTAGAACACGCGCGACGGCTCACTCCGCAATGTTCGCACTCGCGCCTGGCCGCGTCGCCGTCACGAGTACGTGGCGCCGCCCGCGGGCTGCTGGGGTCGCGCGGAGCTGAAGCGGGCCCGGCCGGCCGGCGCCGGACGCAGACGTACATCTCTCCCAGCTTAGATATATCTAGTTGGGACAAGTGCACGTCTTAG
- Protein Sequence
- MVSIFAGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQHQQQQDLHKMAQEHQPHEVQQYYHQVPSQQEPDPHTYVHVHEYTHQDHGAAKSLKRECPLSVCGIRARGGDATAAPLNTSYVYVVRGDTLGLEHARRLTPQCSHSRLAASPSRVRGAARGLLGSRGAEAGPAGRRRTQTYISPSLDISSWDKCTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -