Asph001117.1
Basic Information
- Insect
- Asteroscopus sphinx
- Gene Symbol
- L
- Assembly
- GCA_949699075.1
- Location
- OX453001.1:20285938-20304401[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.7e-06 0.0002 22.9 1.7 1 23 83 105 83 105 0.99 2 16 0.72 85 5.2 5.8 1 23 111 133 111 133 0.97 3 16 9.7e-06 0.0011 20.5 4.1 1 23 139 161 139 161 0.99 4 16 3e-05 0.0035 19.0 0.1 1 23 167 189 167 189 0.98 5 16 0.00092 0.11 14.3 0.1 2 23 205 227 204 227 0.95 6 16 6.9 8.1e+02 2.1 0.1 9 23 258 273 254 273 0.93 7 16 0.35 41 6.2 0.0 3 23 325 345 324 345 0.97 8 16 0.19 22 7.0 0.0 3 23 360 380 359 380 0.91 9 16 0.00041 0.048 15.4 0.5 1 23 388 411 388 411 0.95 10 16 0.11 13 7.7 0.0 1 23 416 439 416 439 0.92 11 16 0.016 1.9 10.4 0.1 1 23 500 524 500 525 0.94 12 16 0.00023 0.027 16.2 0.1 2 23 588 609 587 609 0.96 13 16 0.067 7.8 8.4 0.0 1 23 617 639 617 639 0.97 14 16 1 1.2e+02 4.7 0.3 1 23 743 765 743 765 0.94 15 16 0.004 0.47 12.3 0.1 1 20 773 792 773 795 0.95 16 16 0.18 21 7.1 0.3 1 23 802 824 802 824 0.94
Sequence Information
- Coding Sequence
- ATGCGTGATTCCAAGTTAAGGCCGCCTTCGACGCCGGCTGCTCTGCGCAAATACAATGTTGGTGTAGGTCAGGAAATCACTTTTTGTTATGAGGCGCTGGGCAGCGTGGGCAGCACGGCAGGCAGCTCTTGGCCGTCATCGACGCCGGAGCCGTCGCCGTCGCCCGCGTCAACGCCGACATCAGCCGACGCGGCCGACGCCGAGGCCGAGCCTCCCTTCACTCTTGGCGCCACAGAACACACCCCTTACCAGTGCCAGTTCTGCGATAAAGCCTTTCCGAGACTTTCTTACCTCAAGAAACATGAACagACCCATTCGGATCAGATGCCCTTCCGTTGTGAGTTCTGCTCGCGGCTGTTCAAACACAAGCGTTCTCGCGACCGCCACGTCAAACTGCACACCGGGGACCGCAAGTATCGCTGCGCACACTGCGAATCTGCCTTCTCCAGGAGCGACCACTTGAAGATACACATGAAGACACACGACAATCAGAAGCCGTTCCAGTGTACGGTGTGCAACCGTGGGTACAACACGGCGGCGGCTCTGACGTCACACATGCAGGGCCACAAGCGGGACCGAGAGGGCCGCGAGCCGGACCGTCGCAAGGCAATGCGCTGTCTGCGCTGCGGGGACGCCTTCCGACGACCAGATTTACTGCAGGCACACATGGCGAGCGCCCATGGCGTCGACGCTGCAGCCATGACTCCACCGCGCCGAGTCGCATCTCAACCGCCTCCCACACTGCTGGCTTGCATCTACTGCACTCGCGACACATTCACAAGTATGGAGCAGTTACAGCTGCACGTGCGGGCAGCGCACTCGGCGCTCCTTAACGGTGAAGGACCAGTACAAGTCGACCAACCGACCCCCACTGATCTAAGTCGTCGGGCTACCGATGACATTCCGCCAGCTAAACGACCACGTTCCGGCTCTGGCACTCCACAAACAACTCTGTCACCAAGCACATTACTCTGCAATCAATGTGACGCCGCCCTACCAGACTTCGAAGCGTTCCGTGCTCATTTGAAGGGACACCTCGAAGAAGGTGGTGAACTAGGACGATCAAGCCCAGCTCCTTGCGTTCACTGTGGTGCTACATTCGCGGATGCTGCGGCATCTGAACGTCACCTCACAGCACATTATTTGGCAGTTTCCTGCGAGTACAGTTGCCATAGTTGCGCCCGAAGCTTCTCTGCTCCTGATGATTTACAAAAGCATCTTCTAGAATTGCACTCACATCACCTGTATAGATGTGCTCTTTGTAAGGAGATTTTCGATTCGAAAGTTGCGATTCAGGTACACTTTGCAGTAGCACACAGCGGTGAGAACAAAGTGTGGGTGTGTCGGTCATGCGGGGCTGGCGCGGGCGCTCTTCGCTCGGAGGCTGAGGGTGCTGCCCACGTGCGGTCTCGTCACGCCGCTGCAGCCCCGCGCTGTGCCTGCGGAGCCCTACTCGGCAGTGGAGTCACAGCTAGGACTCCCAGACCACATCGCGCATATCGGTGCCCCGTGCCCGCCTGTAATGACGCCTTCGCGGTGCAATACCTGCTTGAAAGACACATGCAGGCACATCACGCTATTCAACAGCAGGTTCTAAATGGAGAATTAAGCAGAACGAAAAGAATGGAAACCAGTAACGGTGGCGAAGGAGGTGACGACGCTAGGTCCCCTTGCACCCCTGGAGTCGACAGTGGTGGTGTGACCACCGCAGTGGTCGCTGCAAGTGAGGAGCGGCGGCGGAAGAACGGTGCCGTGGCACTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTGGAGGCGCACACGCGCGCGCACTCGGGCGCCGCGGCCGCGCGACACAAGTGTCTCATCTGCGATGAAGTGTTGCCGTCTGCTGCGGTGCTGGCGGAACACAAGCTCACTCACTGCAAGgtGGTTTCCGGCGACACATGTTCCCAATGTCGCGCTAGACTGCTATCTGAAGAGTCATTCCTCAATCACATGGCGCGGCACCACCCGGCCTTACCGGCACCATGCGTCGTGTGCCGACAGACACTGGCCTCTGAAGCCGAAGCGAGACTCCACGCCCGCTTCCACCTCCGACCGGGGGAAGACGAACAGAGATGCGCGATTTGTCTCCGAGCGTTGCCCGAAGGCGAGGCAGGGGAAGGGGCCCGCGCCTGCTCGGCCTGCTACGCGCGCCACGCCGCCCCGCATCCCCCACCCCCCACCGACCACGACTGCCGCCTCTGCCGTCGAGCTCTCGGCTCCCCAACACGACTACAGGCACATCTCATTGAACATACCTTCGCGGGTATCGGCGCTTTTACCTGTTATCTATGTTCGGCCGTATTTACGAGTGCCGCTGGCCTTCAGCGTCATCTACCGGAGCATGCGTCCGCACCACGTCCTTATGACTGTGCAAGATGTGGACTCAAGTTCTTCTTCCGCGCGGAGTTAGATAATCACGCGTTTGTGCATCTTGAGGAAGCGGAAATTGCTCAGCGGGCTTTCTATGAGGCGTATGCACGTGGTGCTGCTTCAGCGTGGGCCGCTTTAGCACCGCCGGAGCCTCGAACGTCTCCACCAGAGCCTGAAGTCAAGCGTGAGCCGGACATCAAAGAGGAGCGAGGAACTGACGAGTATATCGAAGTCTCGTCCCCACCCCCTGCACCTCCCCTGCCCTCACCTCCTGCACCACCATCGCCTGCACCTGTAGTGAAGCAGGAGAAACCAGACGAGGAGTAA
- Protein Sequence
- MRDSKLRPPSTPAALRKYNVGVGQEITFCYEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRKAMRCLRCGDAFRRPDLLQAHMASAHGVDAAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPTPTDLSRRATDDIPPAKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYSCHSCARSFSAPDDLQKHLLELHSHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSRHAAAAPRCACGALLGSGVTARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAIQQQVLNGELSRTKRMETSNGGEGGDDARSPCTPGVDSGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSQCRARLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGEGARACSACYARHAAPHPPPPTDHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTSPPEPEVKREPDIKEERGTDEYIEVSSPPPAPPLPSPPAPPSPAPVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00822228;
- 80% Identity
- -