Asph038329.1
Basic Information
- Insect
- Asteroscopus sphinx
- Gene Symbol
- -
- Assembly
- GCA_949699075.1
- Location
- OX453030.1:8907483-8914000[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.16 19 7.2 1.0 1 23 63 86 63 86 0.94 2 19 0.76 89 5.1 0.1 2 23 113 135 112 135 0.91 3 19 3.2e-05 0.0038 18.9 0.7 2 23 158 179 157 179 0.96 4 19 0.0006 0.07 14.9 1.1 1 23 183 205 183 205 0.98 5 19 0.044 5.2 9.0 2.3 1 23 210 233 210 233 0.90 6 19 0.03 3.5 9.5 2.6 2 23 241 263 240 263 0.94 7 19 0.00029 0.034 15.8 2.3 2 23 271 293 270 293 0.95 8 19 8.7e-05 0.01 17.5 2.9 1 23 299 321 299 321 0.98 9 19 6.6e-06 0.00078 21.0 3.6 1 23 327 349 327 349 0.99 10 19 0.0029 0.34 12.7 0.9 1 23 451 474 451 474 0.97 11 19 0.28 33 6.5 0.0 2 23 501 523 500 523 0.95 12 19 0.032 3.8 9.4 1.4 2 23 546 567 545 567 0.97 13 19 0.0022 0.26 13.1 0.1 1 23 571 593 571 593 0.93 14 19 0.18 21 7.1 4.9 1 23 598 621 598 621 0.95 15 19 3.9 4.6e+02 2.9 0.2 2 10 627 635 626 649 0.81 16 19 9.2e-05 0.011 17.4 0.7 2 23 658 680 657 680 0.96 17 19 0.00082 0.097 14.4 3.1 1 23 686 708 686 708 0.98 18 19 0.0089 1.1 11.2 2.9 1 23 714 736 714 736 0.98 19 19 0.00017 0.02 16.6 3.2 1 23 742 765 742 765 0.98
Sequence Information
- Coding Sequence
- ATGAATGACGAAAAGAACGATTGGAGCGTTACTGTGTCCAAAAAGGGTACAAAAGAGGGTTCACCAAAAATAAGGATACTATCTCTTATGACAGAAAGAAAAGATATACATAAACATTTACAGAACATTAGGAATATTTTGTTACACTCTAATGCGACCCCAATCAGAAGTCACACAGGAATTGGTTACTCATGTGGCTTCTGTTCAGAACACTACCCTATACCCAAAGATCTAAAAACCCACACACTAGAGAAACATGACGACTCTGTTAAAAGCAAATACATGAAAGGTCTTGCTCTAACAAATTACGTCGTCAAAATAGATATTACTGCATTGAAATGCCATGTTTGCGGTCAAGATATAGAAGGATTAGAACCTCTGATGGAccatttaaaaattatacacaACAAAACTATGCATACAGATATAAAAAATCATATATTGCCTTTCAAATTCGAAGGAGATATTCTAAACTGCGTGATGTGCCCAAAAAGTTTTGAACGGTTCAAGTTATTACAGGAGCACATGAATACGCATTACAGGAATTataattgtacgatctgcagtTCATCTTTTGTTACCTATAGAACACTTCGCAGCCATATAGCTAGACACAAGCAAGGGGAATTTCCATGCAGTATCTGCACAAAAATCTTCGACACGGAAAACAAGAAACAACACCACGAAAGGTTTGTCCACTTGGGAAAGGACACAAGAAATAAATGCCCACATTGCAGCGAAAAATTCACGACTTACGCGAAGAAAACACAACATCTGGTGAAAGTGCATGGCGCAGAACCTAGAGTCCTTAAATGTATGGCTTGTGACAAAACATTCAACAGAAGAGACAGATTGACTCGACATACCAAACGGGACCATTTACTAGAAAGAAAATTTCAATGCGAACACTGTGATATGAACTTCTACGGAAAGAAAGAATTAACCATGCACATGTTAAAGCACACAGGAATCAAGAAATATACGTGCGATCTCTGTAAGAAGTCGTTTGGACGGAAACATACTTTGAAGGAACATTTACGAATACATGCGGGCGATAGAAGGTTTAAATGTGGTCGAAGTGAGGCGGCAGAACTTGCACTCAAATTTCTATCCGGGAATAAAGATCAACAGGTAGCATCAAAAACAGAAACATCAAAATCAAaggtagttttaaataaaaatacaggaGCTACCAATATTAACTCCGTAGAATCTGAAAATGCAGCAGTTATTAAAACTaagaaaaagaacaaaaaacttTGCGAAGAAGAATTGTTTAAACAACGTTATAATATAAGAGAGATTCTTCTCTGTAGCAACGCTACGCCGATCCGTAAGTACGCTATTGGATATGTGTGCTGCTTCTGTAACGAACAATTCCCAGAACCAGCTGAATTGAAGACTCATACAATAACAAAACATGATGACTCGGCTAAGCTTGACTTCATGAAAGGTTATACCTTATTACGCTTCTTGGTCAAGCTAGATATAACCTCATTAAAGTGTTCCTTGTGTGACGGAAGCATAGATTCAGTTGGAAACCTGATCGAGCATCTGATGAGCGAACATGGAAAGAAAATGTTTACAGATATAAAGAGCTACATAATCCCGTTCAAATTTGAAGACTCGACACTAAAATGTAGCTTTTGCCCTTCAACTTATAACAGATTCAAAGTGCTGCAAGAGCATATGTATACACATTACAGTAACTTTGTTTGCGATATATGTGGGACTGGGTTCGTTAACGAAAATATGCTCAGCACACATAGCGATAATCACAAAGTAGGAGTCTTCAAATGCAGCCACTGCCCCGAAAAATTCGACACTCCAGGAAAGAAGAAATGCCACTTAAAGACAGCACATTTGCTGGCGCTAAACAAATGCGGATACTGTGACGAAAAATTTATGTGGTATCGCCAAAAAAGTGCCCATATTGCTGAAGTACATGGAATCGCAGTAGATACTCCGAAAGAATGCAAAGCGTGTGACAAAGTTTTCCCCAcagaaacaaaactaaaaatgcaCATAAGAAAGGATCATCTTCTAGAAAGACGCTTTAAATGTACTGAATGCAATATGGGGTTCTTTACTAAAGTATGTCTTAACGATCATATGGTGAAACATACTGGCGTCAAAATGTTTACCTGTGAAGTTTGTTGCAAGTCGTACGGCCTTAAGAAGACTTTGAGGGAGCATATGCGAATACATGATAATGATAAAAGGTTTAAATGTGAGAAGTGTGATCAGGCTTTCGTGCAGAAGTGCAGCTGGAAGGGGCATATGCGGTCTAAGCATGGGCTGATAGTTTAA
- Protein Sequence
- MNDEKNDWSVTVSKKGTKEGSPKIRILSLMTERKDIHKHLQNIRNILLHSNATPIRSHTGIGYSCGFCSEHYPIPKDLKTHTLEKHDDSVKSKYMKGLALTNYVVKIDITALKCHVCGQDIEGLEPLMDHLKIIHNKTMHTDIKNHILPFKFEGDILNCVMCPKSFERFKLLQEHMNTHYRNYNCTICSSSFVTYRTLRSHIARHKQGEFPCSICTKIFDTENKKQHHERFVHLGKDTRNKCPHCSEKFTTYAKKTQHLVKVHGAEPRVLKCMACDKTFNRRDRLTRHTKRDHLLERKFQCEHCDMNFYGKKELTMHMLKHTGIKKYTCDLCKKSFGRKHTLKEHLRIHAGDRRFKCGRSEAAELALKFLSGNKDQQVASKTETSKSKVVLNKNTGATNINSVESENAAVIKTKKKNKKLCEEELFKQRYNIREILLCSNATPIRKYAIGYVCCFCNEQFPEPAELKTHTITKHDDSAKLDFMKGYTLLRFLVKLDITSLKCSLCDGSIDSVGNLIEHLMSEHGKKMFTDIKSYIIPFKFEDSTLKCSFCPSTYNRFKVLQEHMYTHYSNFVCDICGTGFVNENMLSTHSDNHKVGVFKCSHCPEKFDTPGKKKCHLKTAHLLALNKCGYCDEKFMWYRQKSAHIAEVHGIAVDTPKECKACDKVFPTETKLKMHIRKDHLLERRFKCTECNMGFFTKVCLNDHMVKHTGVKMFTCEVCCKSYGLKKTLREHMRIHDNDKRFKCEKCDQAFVQKCSWKGHMRSKHGLIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -