Asph021335.1
Basic Information
- Insect
- Asteroscopus sphinx
- Gene Symbol
- RTase
- Assembly
- GCA_949699075.1
- Location
- OX453015.1:23063453-23079185[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0017 0.2 13.4 3.4 1 23 781 803 781 803 0.96 2 13 0.013 1.6 10.6 1.8 2 23 809 830 808 830 0.96 3 13 0.079 9.3 8.2 1.2 2 23 835 856 834 856 0.93 4 13 3.3e-05 0.0039 18.8 1.1 2 23 874 895 873 895 0.97 5 13 0.0002 0.023 16.4 1.6 1 23 904 926 904 926 0.96 6 13 6.8e-05 0.0081 17.8 4.0 1 23 932 954 932 954 0.97 7 13 5.5e-05 0.0065 18.1 4.4 1 23 960 982 960 982 0.98 8 13 1.5e-07 1.8e-05 26.2 1.4 1 23 988 1010 988 1010 0.95 9 13 7e-06 0.00082 20.9 2.9 1 23 1016 1038 1016 1038 0.98 10 13 2.8e-05 0.0033 19.1 0.6 1 23 1044 1066 1044 1066 0.98 11 13 0.008 0.94 11.3 6.4 1 23 1072 1094 1072 1094 0.97 12 13 4e-06 0.00047 21.7 2.1 1 23 1100 1122 1100 1122 0.98 13 13 0.0011 0.13 14.0 0.5 1 20 1128 1147 1128 1150 0.94
Sequence Information
- Coding Sequence
- ATGGGCGATTTTAATGGCCATCACTATAGATGGGGATCAGACATCTGCGATAACTTTGGTATAGGCTTAGTAGATATATTGGATGAACTTAACCTATGTGTGATCAATAATGGCAGTGTCACGCGTAGATCTTCCCCAGGACAGAATAAAAGCTGTGTTGATTTAACATTCTGCTCATCTAATATAGCCAGCCTTTTTAATTGGAGTCGCTTGGATATGACTTATGGGAGTGATCACTATCCCATAATGGTTGAAATCCCTTCCAAAAAAGTCCCAGACCAAATTCCCTCTCCCTTGTTAAAATACCAATTGAACTCAGTGGATTGGGACCTCTACTCCAAAGTTTTAGACTTACGTGTCTCTTCCCTTCCACCCATCAAGCCTGAGACTGCACACgaatgttttttcttattttccaACACAATATCTTCTACAGCAGATGACTGTTTCCCTACAAAAAAACCGCCAACGGGTAAAATTCCATCCCCGCCATGGTGGGATAGAGATTGCTCTGCCGTGATCAGGGCCAGGAATGAGGCCGAAAAGAATTTCAACTCTGTCATGAGCCTGGATAACATTATTGCCTTTCAGCATATCTTGGCTAAGTCCAAGAAATTGCTCAAGAATAAGAAGAGAGAAGGTTGGCGGAAATATTGTGGCTCGCTAAGTCCATCCACTCCAGCGTCGGCCGTGTGGCGTAAGCTGAAGTCGTTCAGGAGTAATTTGAAGCCCTCCTCCAGGAGCATACTATCTGAGGAACTGGGTAACCAGTTCCTTTCTAAATTGGCCCCAGTCTATGTTCCCAGTATGGATGAGTGTGTCACTACGGGCTCGCAGCTGACAACAGATGACCCTCTGGATAGGCCATTTACTATAGGGGAACTTAAATCGGTCCTCGCCCATGTAAAGGATTCCGCTCCTGGAGTGGATGGATTCCCTTACTCCTTCATTACTAAAGCGGGTGATAAGACCCACCAATATTATCTGGACTTAGTCAACTATTGCTTTTCTTCCGGTTATATTCCTCCTGATTGGAAGGTTCAAGTCATCATCCCTTTGTTAAAACCCGGTAAAGATCCTAGTGATCATTGTTCTTACAGACCAATTGCGCTATCGTCCATACTTACTAAGCTTTTAGAGCATTTGGTTAAAAACCGTCTAGAATGGTTTGTAGAAAGCGGAAAGCTGCTCCCGACGACTCAATTCGGCTTCAGGAAAGGTCTGGGTACAGCTGATAGTGTGGGTACCCTCACATCAGTGATCCGACTGGCCCTTAGCAGGAATGAGTCTGTGGTAGCCGTTTTCTTAGACATTTCGGCTGCCTATGATTCTGTTCTCCTCCCACTTCTCAGGCAGAAAATGCAAGAGCTGAGAATCCCGGCTAGGATTCGTCGAATCATATGCAGTATTTTTTTAGATCGCAGTGTTAAACTCAGGACTGTCGGGGAAAACTCCGAGCCGAGGTCGGTTTGGAGAGGTCTACCACAGGGATCCGTACTTAGTCCccttttatataatatttatacttaTGATATTCCTTCTTGTTTAAATCTTAACTGTAATATACTTCAGTATGCTGACGATATTGCTTTATTGGTCTGTGGCTCTTCTATACAAGATGCCTCTCACTCAATTAATATCTCTCTGTCCTCGTTAAACCAATGGCTCTTAGACCACGGGTTATCTTTAAGTGCTCCAAAAAGTTCAGCAGTTGTCTTCACTCGCAAACGCCTTATCCCCCAAGTCGACATTAATATTGACGGCCAATCTATCCCAGTCGAAGAGAAGGCCAGGTTTCTGGGGGTTACCTTGGATTCCAAATTATCGGGAGCGGACCATATTAGCAATACGGTTAAAAAATGTGAGCGCTCGGTCTCGGTCCTTAAGGCTTTGGCTGGCGTCTGGTGGGGGGCCCACCCTTACACCTTAAAACTTGTCTACAATGCACTGGTCAGAAGCGTGCTGGATTACTGCAGTTACTTAATTGAGCCATGTAACAAAGAAGCGTTGCGTAGACTGGATTCTGTCCAGGCCAAATGTATGAGGACCGTTCTCGGTGCCATGAAATCCTCCCCCATAAACGCTCTCCAGATCTCCAAAGAGGATGGGTTACCACAACACCTTTGTGATGACTGCGTTAAGGTGCTGCAAGTTGCGTACTCATTCCGTAATCAGGCGGCGAAAGCACAAGATAAGTTCAAAAAGCTTCTGCAAAGTAACATAAAAGCAGAACCACAGGAAGTTGACCTTAAAACAGAAGATGATCATGACTATCTAGAAGATTTTGAGGATTTAAATTTCAATCCAGATTATTCAAAAACTGAACTGGAAGAGAAAGAGTATACATGCACTAAATGTAACAAACAGTtcacaaaagaaaagaaattcTTAAAACACTTAGAAGCTCATGATAATTTATCACTAGAATGCCCcatttgtaaaaagttatacCATAACCACGCATCACTTGACAAGCACATAGCTAAACACAATAAAGATCTTAAATGTATGATTTGTAGTCAAAGTTTTGACAAACACTCATTTTTATTGGAGCATTTGGTTgaacacacaaacaaaataCAAGTTAAAACTGAAAATGATGTACCAGAACAAAGTTTACAATGTTCAGAATGTGGAATAACATTTATGAAGCAAAGATCCCTCTCTATGCATATGAGAAAACATAAGAATAAAGATGAGAAAAAagaatttatttgtgatacttgtGGAAAGAATTTCGGCATGAAACATTTGTTGAAAAGACACTTGGTAATGCATAGTGAAGTAAAGCCGCATCAATGTACAAAGTGTTCTAAAACATATGCTAGACGTGACCAGCTTATGTCTCACATGTATAGTCACAAAGAACACAAACCTTATGTTTGTTCATATTGCAAGAAAAGTTTTTCACAGATGTGCAGTCTGAAGGACCATGTCCGTAGCCACACGGGAGAGACTCCTTTCTTATGTTCCCAGTGTGGTAAGGGCTTCTCGAATAACTCTAACTTGAGACAACATATGATGAGGCATTCCGGACTCAAGCCTTACGCTTGTAATATGTGTCCTAAGACATTCTGTACCAAAGGTCAAATGACATCGCACATGTCGACACACTCGGGTGAACACCCTTACAAGTGCGAGTTGTGTGGCGCCGCCTTCACGAAACAGAACTCTTTGAAGAAGCACTCCATGATACACCTCGGAGTCAGGCCGTTTGCCTGTGACACTTGTAATATGAGGTTCACATGCAAAGACCATCTGAAGCGTCACACAAGGATCCACACGGGCGAGAAGCCATACAAGTGCAAGTATTGTGAGCGAGCCTTCTCACAGAGCAATGACCTAGTGAAGCATACGAGGCAGCACATTGGACAGAACATCTACCAGTGTACAATCTGCGGGTCTCGATTCAGACTTTTATCTGAACTCAAACAACATTATCCTGTCCACTTCGTGAACGGCAAGGACGACGCCAATGACCCTCAAAACAGTACCAAAGAACAACCTCTCGATGAACCACCTTCTCTTAAAGATCTGCCTATGATGACTCTTAAACCTCCTCCAGAATTTAACCTGTTATCCTTCAGAAACGATAAGGATCTACCACTGGTTCTAAGACCACCGGTAGAAAAAGATCTTCCTATGTTAAGTCTGAAACAACCACCTGATAGTTTTGAATCTTTGTCAGAGGTTAAAACACAGTCGAATATTGATAGGATTGTTATTACTATTAATAGTTGTGATACGAATGGTGTGGTTAATGGTATTACTATTAATTTACCGCCTAAAGAGAGCTAA
- Protein Sequence
- MGDFNGHHYRWGSDICDNFGIGLVDILDELNLCVINNGSVTRRSSPGQNKSCVDLTFCSSNIASLFNWSRLDMTYGSDHYPIMVEIPSKKVPDQIPSPLLKYQLNSVDWDLYSKVLDLRVSSLPPIKPETAHECFFLFSNTISSTADDCFPTKKPPTGKIPSPPWWDRDCSAVIRARNEAEKNFNSVMSLDNIIAFQHILAKSKKLLKNKKREGWRKYCGSLSPSTPASAVWRKLKSFRSNLKPSSRSILSEELGNQFLSKLAPVYVPSMDECVTTGSQLTTDDPLDRPFTIGELKSVLAHVKDSAPGVDGFPYSFITKAGDKTHQYYLDLVNYCFSSGYIPPDWKVQVIIPLLKPGKDPSDHCSYRPIALSSILTKLLEHLVKNRLEWFVESGKLLPTTQFGFRKGLGTADSVGTLTSVIRLALSRNESVVAVFLDISAAYDSVLLPLLRQKMQELRIPARIRRIICSIFLDRSVKLRTVGENSEPRSVWRGLPQGSVLSPLLYNIYTYDIPSCLNLNCNILQYADDIALLVCGSSIQDASHSINISLSSLNQWLLDHGLSLSAPKSSAVVFTRKRLIPQVDINIDGQSIPVEEKARFLGVTLDSKLSGADHISNTVKKCERSVSVLKALAGVWWGAHPYTLKLVYNALVRSVLDYCSYLIEPCNKEALRRLDSVQAKCMRTVLGAMKSSPINALQISKEDGLPQHLCDDCVKVLQVAYSFRNQAAKAQDKFKKLLQSNIKAEPQEVDLKTEDDHDYLEDFEDLNFNPDYSKTELEEKEYTCTKCNKQFTKEKKFLKHLEAHDNLSLECPICKKLYHNHASLDKHIAKHNKDLKCMICSQSFDKHSFLLEHLVEHTNKIQVKTENDVPEQSLQCSECGITFMKQRSLSMHMRKHKNKDEKKEFICDTCGKNFGMKHLLKRHLVMHSEVKPHQCTKCSKTYARRDQLMSHMYSHKEHKPYVCSYCKKSFSQMCSLKDHVRSHTGETPFLCSQCGKGFSNNSNLRQHMMRHSGLKPYACNMCPKTFCTKGQMTSHMSTHSGEHPYKCELCGAAFTKQNSLKKHSMIHLGVRPFACDTCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFVNGKDDANDPQNSTKEQPLDEPPSLKDLPMMTLKPPPEFNLLSFRNDKDLPLVLRPPVEKDLPMLSLKQPPDSFESLSEVKTQSNIDRIVITINSCDTNGVVNGITINLPPKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -