Basic Information

Gene Symbol
ct
Assembly
GCA_949699075.1
Location
OX453021.1:23602401-23646532[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 3.2e-27 7.1e-23 81.7 0.0 3 70 241 309 239 315 0.94
2 3 3.7e-32 8.3e-28 97.5 0.0 4 77 640 714 638 716 0.96
3 3 5.3e-31 1.2e-26 93.8 0.0 3 75 843 916 841 920 0.95

Sequence Information

Coding Sequence
ATGTGTGGCGTCCGTGATTTCCGTCGCATCTATCTCGACGATACGCATCTTCATGCTCGAGCGACGGCGACACCCCACCTGACGGCTACGCCAACAATTGATATCTTCCGAAGGTCGGGTAATAACATGCTGAGAATCGCCCAACTAGTGGAAGACGTGCGTCGTCTCCAAGCATCGCTGAACGCGCTACAAGAGGCGCACGCACAGCAGCTGCAGAGGCTGGAAGAGAGGCTGGACGAGAAGAAACAGCACATCGCCAGGCTTGAAGCGAGGCTCGACACGCAGCGAGACTACGATGATATTAAAAGAGAAATCAGCATGCTCCGAGCGCTCGACCTGGGCGGTGGGGAGCGATCTCTAGAACGGAAGCCTGAAATTCGCCCGCCGAGCACCGCGCCTTCGCTCCGAGACCACTCTGCCGAGCGCGAGCGGAGCGCAGAGCGACGGGATACAGGTGTGGAGGAGTGGCCCATCACGCCGCCGCCACTCAACAACAACACGACACACCACAACCACAACGGCCCCATGCCCCTGCCGCTGCCGCCGCCGAGCCCATTCCGCTTCGAAGAGCACCGCACCTACAGGTTCGCCGAGGACATGGGGCCCTTACCACCCGGCGCGTTGGTGGGACGCCTCGGCGACTCCCTCATCCCCAAAGGCGATCCCATGGAGGCGCGACTGCAAGAGATGCTCAGATACAACATTGACAAATATGCGAACACCAATCTGGACACGTTGCATATAAGCCGGAGAGTGAGAGAGTTGTTGTCGGTCCACAATATTGGTCAGAGACTGTTCGCGAAGTACGTCCTGGGGTTGTCGCAAGGCACGGTGTCGGAGCTGCTGTCGAAACCCAAGCCGTGGGACAAACTGACGGAGAAGGGCCGAGACTCGTACCGCAAGATGCACGCGTGGGCCTGTGACGAGGCCGCCATCATGCTGCTCAAGTCACTGATCCCTAAAAAAGTCGGAACGAAAGATGGAGCCGGTGCGGTGTTCGGTCGACCGGACGGTGAGGGAGAGGATAGGCTCCCGCACTCGATTCTGAATGAAGCACATCTAATGAAGACGCCCTGCGGACCTCCCCACAACGATGATTCCAGAAGCAATGAGGACTCTAGCTCGCCGAGGACTCAATGCCCCTCACCGTTTTCCAATAAGGACTCGAGTCAAAACAGAAGACTCAAGAAGTATGAGAACGATGACATTCCTCAAGAGAAGGTAGCGCGCATTTACCAGGAGGAGCTTGCCAAAATCATGACTAGGAGAGTGGAGGACATTCGCCGCGAAGGTTTCCCCGGCATGTTTCCCCCTTTTTTCAGCGGCGGCATGCCACCACACATGGAGAGGCCACCGGAAGACATCCGCATGGCGCTGGAAGCGTACCACAGAGAACTTGCCAAGATCCAACCCGCTAGCAACATTCCCAATCTCCACAACTTACCAGCAATGCCGCCCTTTCCAAACCTCCTCGCGTTGCAGCAGCAAGCGATGCACCAAGCACAGAACCAGCAGATGAATGGGTCAGGAGCGATCCAAGATCTCTCTTTGCCTAAAGATAAAAATGCCAAAATGAATGGAATGACTGATAGTGATAAGGATAGGTCAATGGATGCAGAAGAGGCTATTAGACACGCGGGGAGCGCATTCTCGTTAGTGAGGCCAAAATTAGAGCCGGGACAGCAATCGACAGGGtcatccgcatccagtccactgGGCAATGCGATACTACCACCCGCAATTACTCCAAATGAAGACTTCAGCAGTTCAGCAGCAGCCAGTCCACTGCAAAGGATGGCATCGATCACGAATAGTCTCATCTCACAGCCATCAAATCCACCTCACCATCCACCTGTACAGAGGTCCATGAAAGCAGTTCTTCCACCAATCACACAGCAACAATTCGATCTCTTTAATAATTTGAACACAGAAGATATAGTGAGGAGAGTAAAAGAAGCATTAAGCCAGTACTCCATTAGCCAAAGACTGTTCGGTGAATCCGTCCTTGGTCTATCCCAAGGATCAGTGAGTGACTTGCTAGCGAGGCCGAAGCCCTGGCACATGCTCACGCAGAAGGGACGAGAGCCTTTCATCCGCATGAAGATGTTCCTGGAGGATGATAATGCTGTCCACAAGTTGGTTGCATCACAGTACAAAATCGCGCCGGAGAAACTAATGAGAACTGGAAATTACAGCGGAGCACCTCCATGTCCGCCAAATATGAACAAACCCATGCCGCCAACGCAGAAGATGATTTCCGACGCGACCTCTTTGCTGAGCAAAATGCAACATGAGCAGTTACTGGGTCCGGGCCACCTCGGTCACTTGGGCCAGCCCACGCCACTGCTGCTGACGCCACCCGGCTTCCCGCCGCACCACGCGGTCACGCTGCCGCCGCAGCACCAcgacaacaacaacaaagagaGGAAGCCCCCGCCCCCGCCGCAGCCGCACCACCAGCCCCCCATCATGCGCAGCCTGCACCAACACATATCTCCGAGCGTCTACGAAATGGCTGCGCTCACACAAGATTTAGACACACAGACAATTACGACTAAAATTAAGGAAGCCCTACTGGCTAATAACATAGGACAAAAAATCTTCGGCGAAGCTGTCCTAGGTTTATCACAGGGTTCCGTCAGTGAATTACTATCAAAACCGAAACCCTGGCATATGCTAAGCATCAAGGGAAGGGAACCATTTATTCGTATGCAACTATGGTTGAGTGATGCTCACAACATTGACCGTCTTCAAGCTTTGAAGAATGAAAGACGAGAAGCGAGTAAACGACGGCGGTCAAGTGGTCCCGGACAAGATAACTCCTCCGACACATCATCGAATGATACATCAGAGTTCTATCACTCCAGCTCGCCGGGACCTACCGCGGGAGCGACGTGTGCCAAGAAACAACGAGTACTATTCTCCGAAGAGCAAAAAGAAGCGCTCAGATTAGCATTTGCGCTCGACCCCTACCCAAACATGCCAACGATCGAATTCCTGGCCGCCGAATTAGGTCTGTCGTCACGGACCATCACCAACTGGTTTCACAATCATCGTATGAGACTAAAACAACAAGCGCCGCATGGCTTGCCAGCTGAACCTCCTGCACGAGATCAGTCCTCTGCGCCTTTCGACCCTGTGCAGTTCCGTCTTCTCCTAAATCAAAGACTATTAGAACTTCAGAAGGAAAGGATGGGCCTCGCTGGCGTACCTCTACCGTACCCGCCGTACTTCGCGGCAAACTCAAACTTGGCGGCGCTGATAGGTCGCGGGTTGATTCCACCCGAAGACCGGGTAAAAGACCAATCGGGTGGCCTCGACCTTTCGATGCCGTTGAAGCGAGAGCCCGACGGTGATGACTTCGAGGACGACGACGTCGAGAGCAATCTTGGCTCCGAGGACTCGTTGGACGAGGAATCTAAGACTGAACCGAAAGCTGCGTCGACGCCGGCTGGCCGCTCCAGCAGACGGAAGCCCGCTGCGCCGCAGTGGGTCAACCCCGACTGGCAGGACGAGAAACCACGCAACCCCGATGAAGTGATAATTAACGGGGTATGTGTAATGCGAAGCGATGACTTCAGGAGAGAGGCGGAGGAGACGGTGCTCGTGGAGCCGTCGCCGGTGCTGCGCGAGGGCTCGCCGGCCGCCTCGCCCACGCCGCGCACGCTGCACACGCCGCACACGCCGCACACGCCACACACGCCGCACGTGCCACACATGCCGCACACGCCTGATGACGTCATCCCTGAAGACAAAATCAAATCCGAAACCGACGACGGTTGGGAGTACTAA
Protein Sequence
MCGVRDFRRIYLDDTHLHARATATPHLTATPTIDIFRRSGNNMLRIAQLVEDVRRLQASLNALQEAHAQQLQRLEERLDEKKQHIARLEARLDTQRDYDDIKREISMLRALDLGGGERSLERKPEIRPPSTAPSLRDHSAERERSAERRDTGVEEWPITPPPLNNNTTHHNHNGPMPLPLPPPSPFRFEEHRTYRFAEDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNIDKYANTNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAIMLLKSLIPKKVGTKDGAGAVFGRPDGEGEDRLPHSILNEAHLMKTPCGPPHNDDSRSNEDSSSPRTQCPSPFSNKDSSQNRRLKKYENDDIPQEKVARIYQEELAKIMTRRVEDIRREGFPGMFPPFFSGGMPPHMERPPEDIRMALEAYHRELAKIQPASNIPNLHNLPAMPPFPNLLALQQQAMHQAQNQQMNGSGAIQDLSLPKDKNAKMNGMTDSDKDRSMDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNAILPPAITPNEDFSSSAAASPLQRMASITNSLISQPSNPPHHPPVQRSMKAVLPPITQQQFDLFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPPCPPNMNKPMPPTQKMISDATSLLSKMQHEQLLGPGHLGHLGQPTPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPPPPPQPHHQPPIMRSLHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREASKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTAGATCAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLAAELGLSSRTITNWFHNHRMRLKQQAPHGLPAEPPARDQSSAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLIPPEDRVKDQSGGLDLSMPLKREPDGDDFEDDDVESNLGSEDSLDEESKTEPKAASTPAGRSSRRKPAAPQWVNPDWQDEKPRNPDEVIINGVCVMRSDDFRREAEETVLVEPSPVLREGSPAASPTPRTLHTPHTPHTPHTPHVPHMPHTPDDVIPEDKIKSETDDGWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01338275;
90% Identity
iTF_00445005;
80% Identity
iTF_00171645;