Basic Information

Gene Symbol
pnr
Assembly
GCA_035079395.1
Location
JAVHKZ010000001.1:9317161-9323292[+]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.5e-18 1.5e-14 53.8 3.2 1 34 110 142 110 144 0.97
2 2 8.2e-19 3.5e-15 55.8 4.9 1 35 164 197 164 198 0.98

Sequence Information

Coding Sequence
ATGTTTGCCTGTTCATCGCGTCCTTCAATCTCGTCCAACTAtgcattaaacttacaaaacgAGAACCTCCGAAATTCTCAGCAACCGGTTTATTTTCCATGTAATCGTCAGCCAGCGAGTATGTTTTCACAGTACAACAATACTACCCACAATTCCAACTGGCACCCACCACCTCATTTACCAGGGCCTGCTCATCAAAATAGCGCGAATACGTTAGCAAGTTCCTTCTACTCTGCACAGAATTCAATGTTGTGGGCAAATCCTGCCTTCCAGTCAGCCACTCCATATGACGCGACGATGGAGTTTCAATTTGGCGAAGGTAGAGAATGTGTCAACTGCGGAGCGATTTCAACGCCACTGTGGCGTCGCGATGGCACCGGTCACTATTTATGTAATGCATGCGGACTGTACCATAAGATGAATGGAATGAATAGGCCTTTAGTTAAACCTTCGAAACGCATGGCATCTTCTAGAAGATTAGGTCTGTGTTGTACGAATTGTGGaacaccaaccaccaccttatGGAGAAGGAATAATGACGGCGAGCCAGTATGTAACGCTTGCGGTTTGTATTTTAAACTACACGGTGTCAATAGACCATTAACGATGCGTAAGGATGGCATTCAGACGCGAAAACGAAAACCTAAAAAACCTCCTACAATTTCGTCGTCCAGCAACCAATCAAACGTTTTGGCTAATGGTGTGACTTCGACTGCTTCAGACTCGTTAAAAAATTGTAGTCATGATGAACGAAATTACCTTAATTTACTGAGTAATGCGACCGCTTGCGTTAAGATTTTGAAATCTTTTGCTCGTGCCTCCGTCGATTATCTTTTAAAAGGAGCCAACGAAAAAAGTTATTTTAGTGTTGCAAaaaaattcaatGTTGATGCCATTACGATCCAGAATGTCGTTGAAAGCTTAGCTTACGTCCTATTAGAGTGTTACAAATATAGAGTTGATGAAAACGAACTTCGTAAATTATTTCGAGCtattaattttgatgaaaatcagACTCAAACCTTGATCGAATTTTTTATCGAGCAGAAGCCATTATTGGAGAAGCTTTTTACGAAAACTGATGTAGAATCCTTTTTCTATGATCTACAATGGCGATTTGAAGCGAAGATCGGTTCTAGAGCGTTGCTCAATCAGACCACACCGATTGTTACGCTGAACCTGAAGACTGGAGATAATTCGAAGGCAGCTCTCGCCCAAGACATTCGGAATAATCTGTTACAAACTGATCCAAACACTCTTGTCCAAATAACGAATTCCCTAGAGAAAGCTTTACAATTTGCTCAATCAAATGCTGCTcgcaaaatcgaaaaaaaaattaagaagctAATACCAAACGAATAA
Protein Sequence
MFACSSRPSISSNYALNLQNENLRNSQQPVYFPCNRQPASMFSQYNNTTHNSNWHPPPHLPGPAHQNSANTLASSFYSAQNSMLWANPAFQSATPYDATMEFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRMASSRRLGLCCTNCGTPTTTLWRRNNDGEPVCNACGLYFKLHGVNRPLTMRKDGIQTRKRKPKKPPTISSSSNQSNVLANGVTSTASDSLKNCSHDERNYLNLLSNATACVKILKSFARASVDYLLKGANEKSYFSVAKKFNVDAITIQNVVESLAYVLLECYKYRVDENELRKLFRAINFDENQTQTLIEFFIEQKPLLEKLFTKTDVESFFYDLQWRFEAKIGSRALLNQTTPIVTLNLKTGDNSKAALAQDIRNNLLQTDPNTLVQITNSLEKALQFAQSNAARKIEKKIKKLIPNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-