Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00015 0.013 16.4 3.2 1 23 82 104 82 104 0.97

2 6 2.2e-06 0.00019 22.2 2.9 1 23 110 132 110 132 0.98

3 6 7.8e-07 6.6e-05 23.6 1.4 1 23 138 160 138 160 0.98

4 6 0.00081 0.069 14.1 0.4 1 20 166 185 166 188 0.90

5 6 0.00014 0.012 16.5 1.9 2 23 195 216 194 216 0.96

6 6 0.0011 0.096 13.7 1.5 6 23 226 244 222 245 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00015	0.013	16.4	3.2	1	23	82	104	82	104	0.97
2	6	2.2e-06	0.00019	22.2	2.9	1	23	110	132	110	132	0.98
3	6	7.8e-07	6.6e-05	23.6	1.4	1	23	138	160	138	160	0.98
4	6	0.00081	0.069	14.1	0.4	1	20	166	185	166	188	0.90
5	6	0.00014	0.012	16.5	1.9	2	23	195	216	194	216	0.96
6	6	0.0011	0.096	13.7	1.5	6	23	226	244	222	245	0.93

Coding Sequence: ATGGAATCTCAATTCGAAAATCGAATACTTCCTTTTCATTTTGGGATTAACCCTTTAGCTACGTACGCTCCCATGGAATATTTTGCACATCATCTGGAACGTACGGAAAGAGAGTCAATTCAGTCCCATGTGAACGTTGATATTGATCGGCCGATCGCGCCGGAAGTCAAccataagaaaaacaatttGGAGCCGACGCCGCCTCCTAGTGTAACGGAACCACCAAGAGTTCAAAGTAAAACGCATTCATGTTACGTCTGTGGTAAGACACTATCTTCTACCTCGTCTTACTATGTTCACATGAAGAAACATAGCAACAATAAGCCTTATCACTGCCCGCTGTGCGAAGTCAGTTTTTGTCGAAAACCCTATCTTGAGGTACATATGAGAACTCATACAGGAGAACGCCCCTTCCAGTGCGCCGTTTGTTCTAAACGTTTTACTCAGAAAAGCAGTCTCAACATTCACAAGCGCGCTCACACTGGAGAACGTCCTTACTCGTGTGAAATTTGTAATAAAAGATTTGCGGTGAAGAGCTACGTAGATGCTCACAGGTGGACTCACGTATTCGAGAAACCATTAAATTGTGACAAGTGTCACATACCATTTAATTCGAGAACGCAATACGTTTTACACATGAGATCTCATTCGTCAGCATTGGCCTACAAGTGTCCTTGTGGTCGGTCATTCACCAAAGACAGTTATTTAATAAGGCATCAAATAAAGGTGCATCATTCTCCGGCTCGTAATACGTTGCTTCATTCACCAGACGAACCGATTATCCACTCGTTACCTTTGACGTCTGTTGCATCGGCCATACAAGGAAGTATGTCGCCGGGAGTACCTAGTAATATGGATAAATTGTAA
Protein Sequence: MESQFENRILPFHFGINPLATYAPMEYFAHHLERTERESIQSHVNVDIDRPIAPEVNHKKNNLEPTPPPSVTEPPRVQSKTHSCYVCGKTLSSTSSYYVHMKKHSNNKPYHCPLCEVSFCRKPYLEVHMRTHTGERPFQCAVCSKRFTQKSSLNIHKRAHTGERPYSCEICNKRFAVKSYVDAHRWTHVFEKPLNCDKCHIPFNSRTQYVLHMRSHSSALAYKCPCGRSFTKDSYLIRHQIKVHHSPARNTLLHSPDEPIIHSLPLTSVASAIQGSMSPGVPSNMDKL

Sequence clustering based on sequence similarity using MMseqs2