Basic Information

Gene Symbol
-
Assembly
GCA_035079395.1
Location
JAVHKZ010000001.1:21896870-21907268[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.3e-05 0.0011 19.7 1.5 1 23 198 220 198 220 0.99
2 26 0.0031 0.27 12.3 3.0 1 23 225 247 225 247 0.94
3 26 0.00011 0.009 16.9 0.3 3 23 254 276 252 276 0.95
4 26 0.0003 0.025 15.5 0.5 2 21 283 302 282 303 0.94
5 26 0.027 2.3 9.3 1.2 2 23 325 346 324 346 0.96
6 26 8.1e-05 0.0069 17.3 0.6 2 23 373 394 373 394 0.98
7 26 3.1e-06 0.00026 21.7 1.7 1 23 400 422 400 422 0.98
8 26 1e-05 0.00087 20.1 0.3 1 23 428 451 428 451 0.98
9 26 0.01 0.86 10.7 3.2 1 23 461 484 461 484 0.97
10 26 7.8e-05 0.0066 17.3 0.4 1 23 539 562 539 562 0.95
11 26 0.028 2.4 9.3 0.2 1 21 630 650 630 651 0.95
12 26 0.00012 0.01 16.7 6.1 1 23 658 680 658 680 0.97
13 26 2.8e-05 0.0024 18.7 0.5 1 23 686 708 686 708 0.98
14 26 0.00031 0.026 15.4 1.5 1 23 776 798 776 798 0.97
15 26 0.058 4.9 8.3 0.2 3 23 803 824 802 824 0.96
16 26 0.28 23 6.1 2.3 2 23 835 857 835 857 0.96
17 26 0.058 4.9 8.3 2.2 1 20 1019 1038 1019 1040 0.95
18 26 0.00079 0.067 14.1 2.3 1 23 1057 1079 1057 1079 0.98
19 26 0.072 6.1 8.0 0.0 1 23 1085 1107 1085 1107 0.96
20 26 1.3 1.1e+02 4.1 0.0 1 23 1113 1136 1113 1136 0.90
21 26 3.8e-05 0.0032 18.3 3.4 2 23 1223 1244 1223 1244 0.98
22 26 0.05 4.2 8.5 7.5 1 23 1250 1272 1250 1272 0.97
23 26 4.9e-05 0.0041 18.0 2.4 3 23 1280 1300 1279 1300 0.98
24 26 0.004 0.34 11.9 5.3 1 23 1306 1328 1306 1328 0.99
25 26 7.1e-06 0.0006 20.6 0.7 2 23 1400 1421 1400 1421 0.97
26 26 3.8e-05 0.0032 18.3 1.2 2 23 1447 1469 1446 1469 0.95

Sequence Information

Coding Sequence
ATGAGTAACGAACACAACATACCGTCGGATATTTGCACCATTACAGAAAATAACTTGGAGGCTGTTCTATTTTCGGAATTCTCTGGAACTGAAAACATGATCGTAGCATCCGACACCATCAATAATTTATCGGAGTTGGACGGAGCGTTATGCTACGATGAGACAACCAACGAATTATTATACGTTAATATGATACAGCCAAATTTGAACGCACCTGACTCTTTAGTGAATGCCTCTCAATCAGTATTTAACGCTCTTGCAGGACTGTCTACTCTCGCCGATGTTACAACATTCAATGATGGCAATCCGGTAATGTTGTTGGCAAACGGTTCGATCGTCATTCCTAACGACGATGATAGCCTAGTATCCACACACACGGATCCGTTTATTCTACAATTTGTTCAGAGTTCACCTGATTCTTCAACCAAAGAACCAGCGCTCAGTGCGCCGACACCAACTGAGAAGTCTTCAGGTTCTGTGTTCATTAGTGATGATAAATCCAGTGAGTCTGCGCCCAATGTTACTACTGATTTGAAAGAAACTTGTAAAATTATTGAAGTTGATGATATCCTGAACGATACTCCGGTTATATACAAATGTGAATTGTGCTCTAAGAATTTCTCGCGTAATAAAGAATATCGAGCCCATTTAGCGACTCACAAAGATAAGGTTCATAAATGTAGCCACTGTGGGAATTCTTTCAATAAACTGaaAAACTTGATTCTTCACGAAGCTCTACACAACCCGAATGAAACAATTTGTCCGCTCGTCAATTGTCAGAAGAGGTTTAGAAGGTTAGCTAGTCTCAAAGCGCATATTAAATtacacgaagaagaagaaactttaaCGTGTACAGAATGCGGAGAAGAATTTCGTAATCAAATGCATTTGGAGCTTCACTATAAGTATCAGCCTCAGTGTCGATTAACTTTCAACAAGGGGAATGATCCACTTGGCGATAGTGAGAGCAAGTCTTGCAAACTCTGTAATCGAAAATTCCTCAATGCTAGTACTCTTGCTGCTCACAAGAAAGAACATGAAAAGATTAAAAAAGCTCTGGCGACCAAGAGCCATCGTAAAAAAACATCGTCTTCGAAATCGTCTTCAAGAATGAATCGTTGTAAGGTGTGTCCGAAGTGGTTCTTCAAACCGAGTCAACTCATCCGACATATGCGCATTCATACCGGCGAACGACCTTTCGAATGCTCCGAATGTCATAAAGCTTTTAATCAAGCCaattcgttgaaaattcatATGCTCAAACATACTGGTGATCGACCCTATCAATGTCCTTTTTGTCCTTCCGGTTTCAGTCAGAGGGGAAATTTGCGTCAGCACATTAACCGTGTTCATTCGATTCCAAAAGTTGAAGATCTTGTATACGAATGTTCCGAATGTCCTTGCATATTCAAGAAGATATGTAGCTTGAACGCTCATCGAAATCGCGTACATCGTAAAGGTTATAAGTTGGTGTTGTCGCCcgaagaacttgaaaatgatccgtacGAATCGGGTCAGCAAACATCGCCGATTTCCTCATCTCCTTATCGATTAGATGAAGGTACCGATGACCAATGTGAGGTAGCCGCTGAAGATAGAAATGATAATCGTACGTACGCATGCTCGGAATGCACGAAGTCGTTTAAGACGGTGAATGCACTGAAAACTCATCTGAATGAAGCTCACGTACAACTTCCAATTCCGCAAGATGAACAGGAGAATTCTATCACACTTGAAAATAATCTGGATGATTTGGATGAGGAAGAAATGGGAAGATTATTACGAAAACAGACGACAGTAAATACAATTACTATTTCCGTCGATAGAGGTGGCGGAGAATTATggaatcaGAAAgtatttatcaagaaaaaaggaaatcgTCAGTCGTATCAGTGTTCACACTGCCCGAAAGAGAGTGTAAAGCTGAACGAAATGATCAGACATGTAAAAATAAACGTCGTTGGCAAAGTTTTCAAGTGCGAATATtgctcaaaaactttttcacaacaTTCCACGTTCAAGACTCATTTGTCGTTACACGCGAATGCTCAAACGTATCAATGCCAAACATGCCAAGAAAAGTTTTCCAACCCGGCGGAATTGAACGCGCATTCTAAgtCGCACGCTCAGGTAATTGACCTAATGTGTGTAACGTGCATGAAAACGTATTCgtccgaagaaaaagaaacacatcGGTGCTTTTCTACAAAGACGCTTCTGGATTTTGCTATGGATGATGTGGTAAAATTGAATACCCCAGTTGGGCCTGTTGAATCACACGATGTTCAACACCTACACGATAAAGTGAATCTGATATTACCTCCTTACACCTGCACTCGCTGTGATATCACGTTCAAAAGTTACGGAAAACTGAAATCTCATTTACTAGATCATGATCGTAAAGCGTGTAATCTGTGCCGTTCaggATTcgagaacgaagaaaaattaacgCAGCACATAAACTCTGTCCATAAGAATAACGGGAAAACTCCTGCGAAGGAGGAGTGCCTGAAATGCGGTCGACATTACAAAAATACCAAGATTTTAGCTCAGCATACCAGAAAGGCTCATCCTGAAAATTTGGAAtCAAACGGCTCCAATTCAAACAACGAGAGGATTAATTCCGCGTTGAACGTGAATGTGGACGATGATATTTTGACTAAAAATTTAGCTGTGAATGCTACTCCACTTGAAAATAATGTTGATCCCCGCAATgatgttcctaaattttgtgtACCCGACGATTTGAATGTTCATCGAACAGTGGATTATCCCATTGTCCTAGATACTGGAATGAGTCTTGAGAATGGTTCTACGAACGAGAGCGCACCGGTACCTGCGAATCATGATCAAATTTCCAGTTGCGATAGGGTGAACATGTTGGACAATACGAATGAATTAGTTTTATCGATGAGAAATGAAGTACCGTACTTAATGACCCGCGAATCATTGGACGATTGTTTTAGAGATTCTGAGGTAAATACTCTACCAGTGACTGATACGCCAAACGCGGTCGATTCGAACGATGTATTTGACGTAGCCGGTGATATTATTTACAAATGTACAAGTTGTAGCCAGCAGTACTATACGGAAGCGCATCTACAGAAACATTTCCAAGAGTCAGAAATTTGTCACAACGGAATGCCGGACATgatgtttcattatttttacgcTTGCAATACGTGTTACCTCACGTTCAAGACCTTAAACTCTTTTTTGCGACACTTGCAAACGCACAGCGGTGCTGGAATGTATACGTGTGTGTACTGCGATCAACCGAATAAAACGGAAGCCGAGTTGACTCAGCATATTGCAGCTCACTCTCTGAAAAAGGAGTATCCTTGCGTACATTGTGGCGAACTTGCCGAAAGCGCCGAAGCCGTGAAGAAACACATAACGGATATTCATTTGATGTCATCCGCCGACAGTAACGTTTTGGAGACGAGACGCAAAAAGACGATTAGCAGCGAATTACTTctcacagaaaaagaaaaatctattCTAGTCGACCAATTGCCGAATAAATATAGTTCTATTTCAGAAAAAGTACTATCGTCGTTACTGAAGAAGAATATTCGTAAGAAAAGCGAAGATGAAACCAATGAAATACCTCCTGAGACGGAAACCATAAAGGGGAAGAAGAAACGTACCGCAACGAAAGAAAATAGGTGTAACTATTGCGATCGCAGTTTCAAAAAGATGTGCGATTTAATTCGTCATATACGAATTCACACCGGAGAGAAACCGTTTAAATGCGATTATTGCAATAAGTGCTTCACTGTCAAATCGATTCTGAATTGTCATCTGAAAACGCATTTCACGGTGAAGAACGTATTCTGCCATATTTGCAATCGATTCTTCTCTACTGTGGGCTCGTTGAAGATACACATGAGATTACATACTGGTGACCGACCGTATAAATGTTTGTACTGCAAAGAATCATTTCGCACTTCGGGTCATAGAGATAGTCACCAAAAACGGCATTTAGGAGAGAAAGATAAAGCGAGAATGGTGGCTATGGAGGCATCCATGGCTGAACTCGAAGCGCAAGAAAATCTAGAATTATCTCTTAGCGACGCGATCAATTTGCACGACGGAAATTTCCTAATTTCGGAAATCACTGATATCGAAGATTTCAAATTCCAAgagGATACTAGTCTAGATTTGGTCGGCATAGAATCTATTTCAAATCCTAACGAATGCTCAATAtgtggaaaatatttcaaaaagaaaaccgATCTAGAAAAACATATTAGCGTTCATTCTTCAGGTCGGCAAACGAAATGTGACCAATCGAAGAAAACGCGCGCTAAATGCAACGCACCGTCCAGCTCTAAACAATGTGAAGTGTGCCAGAAAACTTTCGCATctgcgaaaaatttgaaaactcatAGAGCGCGACAACATCCTGGTGTGCTCGAATTACCTTTTCCTGTCGATAGCGAATCTCTTCTGTTATCTGATGCGAGGATTAGACCCGATATCGTCGAACCTAATGATACTAATTCGCGTCTCGAAAATTCGAACGAGGATAAAAGTGATAAATgggtggaagaagaaaatttgaatttgtctTTAGTGGTTGGTAAAAATCGAAAGACGGATACgttgaatgatttcttcatcatGGAGAAGCAATTTGATCTTAACAGTATGATATCGGATTTCTTTCCCGATGACGAAAGATAG
Protein Sequence
MSNEHNIPSDICTITENNLEAVLFSEFSGTENMIVASDTINNLSELDGALCYDETTNELLYVNMIQPNLNAPDSLVNASQSVFNALAGLSTLADVTTFNDGNPVMLLANGSIVIPNDDDSLVSTHTDPFILQFVQSSPDSSTKEPALSAPTPTEKSSGSVFISDDKSSESAPNVTTDLKETCKIIEVDDILNDTPVIYKCELCSKNFSRNKEYRAHLATHKDKVHKCSHCGNSFNKLKNLILHEALHNPNETICPLVNCQKRFRRLASLKAHIKLHEEEETLTCTECGEEFRNQMHLELHYKYQPQCRLTFNKGNDPLGDSESKSCKLCNRKFLNASTLAAHKKEHEKIKKALATKSHRKKTSSSKSSSRMNRCKVCPKWFFKPSQLIRHMRIHTGERPFECSECHKAFNQANSLKIHMLKHTGDRPYQCPFCPSGFSQRGNLRQHINRVHSIPKVEDLVYECSECPCIFKKICSLNAHRNRVHRKGYKLVLSPEELENDPYESGQQTSPISSSPYRLDEGTDDQCEVAAEDRNDNRTYACSECTKSFKTVNALKTHLNEAHVQLPIPQDEQENSITLENNLDDLDEEEMGRLLRKQTTVNTITISVDRGGGELWNQKVFIKKKGNRQSYQCSHCPKESVKLNEMIRHVKINVVGKVFKCEYCSKTFSQHSTFKTHLSLHANAQTYQCQTCQEKFSNPAELNAHSKSHAQVIDLMCVTCMKTYSSEEKETHRCFSTKTLLDFAMDDVVKLNTPVGPVESHDVQHLHDKVNLILPPYTCTRCDITFKSYGKLKSHLLDHDRKACNLCRSGFENEEKLTQHINSVHKNNGKTPAKEECLKCGRHYKNTKILAQHTRKAHPENLESNGSNSNNERINSALNVNVDDDILTKNLAVNATPLENNVDPRNDVPKFCVPDDLNVHRTVDYPIVLDTGMSLENGSTNESAPVPANHDQISSCDRVNMLDNTNELVLSMRNEVPYLMTRESLDDCFRDSEVNTLPVTDTPNAVDSNDVFDVAGDIIYKCTSCSQQYYTEAHLQKHFQESEICHNGMPDMMFHYFYACNTCYLTFKTLNSFLRHLQTHSGAGMYTCVYCDQPNKTEAELTQHIAAHSLKKEYPCVHCGELAESAEAVKKHITDIHLMSSADSNVLETRRKKTISSELLLTEKEKSILVDQLPNKYSSISEKVLSSLLKKNIRKKSEDETNEIPPETETIKGKKKRTATKENRCNYCDRSFKKMCDLIRHIRIHTGEKPFKCDYCNKCFTVKSILNCHLKTHFTVKNVFCHICNRFFSTVGSLKIHMRLHTGDRPYKCLYCKESFRTSGHRDSHQKRHLGEKDKARMVAMEASMAELEAQENLELSLSDAINLHDGNFLISEITDIEDFKFQEDTSLDLVGIESISNPNECSICGKYFKKKTDLEKHISVHSSGRQTKCDQSKKTRAKCNAPSSSKQCEVCQKTFASAKNLKTHRARQHPGVLELPFPVDSESLLLSDARIRPDIVEPNDTNSRLENSNEDKSDKWVEEENLNLSLVVGKNRKTDTLNDFFIMEKQFDLNSMISDFFPDDER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-