Basic Information

Gene Symbol
gl
Assembly
GCA_035079395.1
Location
JAVHKZ010000016.1:9773528-9786157[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 5e-06 0.0096 16.4 0.2 17 41 348 369 338 371 0.86
2 5 0.12 2.3e+02 2.3 0.1 18 41 377 397 372 399 0.82
3 5 0.00028 0.54 10.8 1.3 6 38 394 426 389 426 0.80
4 5 0.0013 2.5 8.6 0.6 18 40 433 452 429 455 0.89
5 5 0.053 1e+02 3.5 2.5 6 40 450 480 449 482 0.81

Sequence Information

Coding Sequence
ATGGAAAATTGTTACGCGCCGAATAATATTTCCAACCAATACGGACTGGATTTTCCAGATCCCATGGTGGGAACGGTTCCTATTACGCCGACACCGGCATCTACGCAACCACAATTTTCGCAGTACATTTGGAATTTCAGCCCCGAAGAAATGGGTTCCTTTTCAATCTCGTCGCTCGATTTACAGGACACGGTATCATCGAACTTTTTCGCCGTCAGTCCGTGTTCGCCGACGTCGTCAAATGCTAATACGAATTACTCGTGCAAAAACGATTTGGGTTACTTCTTATCAAAACAAAACTCATCTCCGGAAATAAAACAGCCGCACGACATGGCAGACGTTCTGTTATCTTTGAAACACGCGATTGTTCACCCCGGTCAAATGTCACCGACCTGCTCCTCTCCTAATTGTTATCAAACGTCGCCGCAATATTCATTCGCAAACGGATCGTCAGCCTCGCTATCCTGCGCAGCTTATCCGCATCAGgTACCTCCTCTACCTGCAGAAATAGACCTTATGGATAGTAGTAACCAACAATATTCGCAGTACATGAACACCTTTCCTGATCAAAGTGTACCGTCACCAGGATGCGGTGGTAACACGCTTACGTGGACCTCTAGTCATACCCAGCCATTCTTTCCGGCAATGAGCGTAAACGTAAGCATGAACATGACCATGCATGGTTACCCTACGCCGACCACTCCAACTCCGTTACCCATCGACCCCCTCCAACCACAGTCGCCTTGTCATCAGTTGCAGTGGGCATCGTTGACACCAAGCGCTTCGCCAGTCTATCAGTCTCCAGATTTGGGCAGTCCAAACGCGCACAATAATTGCGGTGGTCTTGGCGGCACAACTTATTCCTTCACGGCCGACATCAAGGCGCAACCGCTGTCGGATCCTATTCTCTGTTCGACTCCTCCTCCATTTAAGAACTATAACAAATTGTGTAGCGGGCAATCCTCTCCCTGCCTGAAGATATCCGGCCAACGCATGAGTAAGTCGACAACTCCGACCAGCGAATACGACAAGAGTAAACCCAACTTATGTAGGATTTGCGGCAAGACATACGCGAGGCCGAGTACTCTAAAAACGCATTTGCGAACGCATTCCGGAGAAAAGCCTTATCGATGCGACGATTGCAATAAATCGTTCAGCCAGGCCGCAAATTTAACGGCTCACGTTCGCACGCACAGCGGTGAAAAACCATTCCGGTGTCCGATTTGCGGGCGTAAATTTTCGCAGTCGTCTTCCGTTACTACGCACATGAGAACGCATTCGGGAGAAAGGCCGTATCGTTGTAAACAGTGTAGAAAGGCCTTTTCCGATTCATCGACGCTAACGAAACATTTGAGAATTCATTCGGGCGAGAAGCCGTATCAGTGCAAATTATGTCAATTACGTTTCTCGCAGTCAGGTAACTTGAACAGACATATGAGGGTGCATAGCGGACTAGAAGCTAACCTTCTATTTTCATAA
Protein Sequence
MENCYAPNNISNQYGLDFPDPMVGTVPITPTPASTQPQFSQYIWNFSPEEMGSFSISSLDLQDTVSSNFFAVSPCSPTSSNANTNYSCKNDLGYFLSKQNSSPEIKQPHDMADVLLSLKHAIVHPGQMSPTCSSPNCYQTSPQYSFANGSSASLSCAAYPHQVPPLPAEIDLMDSSNQQYSQYMNTFPDQSVPSPGCGGNTLTWTSSHTQPFFPAMSVNVSMNMTMHGYPTPTTPTPLPIDPLQPQSPCHQLQWASLTPSASPVYQSPDLGSPNAHNNCGGLGGTTYSFTADIKAQPLSDPILCSTPPPFKNYNKLCSGQSSPCLKISGQRMSKSTTPTSEYDKSKPNLCRICGKTYARPSTLKTHLRTHSGEKPYRCDDCNKSFSQAANLTAHVRTHSGEKPFRCPICGRKFSQSSSVTTHMRTHSGERPYRCKQCRKAFSDSSTLTKHLRIHSGEKPYQCKLCQLRFSQSGNLNRHMRVHSGLEANLLFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00171162;
90% Identity
iTF_00171162;
80% Identity
iTF_00171162;