Basic Information

Gene Symbol
SMARCC2_2
Assembly
GCA_035079395.1
Location
JAVHKZ010000002.1:9720827-9726683[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.2e-15 8.6e-12 45.5 0.2 3 44 614 655 612 657 0.95
2 2 9.4 1.1e+04 -2.9 0.0 23 40 716 734 715 734 0.91

Sequence Information

Coding Sequence
atgctGAGCGCTTTAGGACCCAAGAAAGATGGCGGACCCAATGTTAAATTTTTCGAATGCCCAGAAACTATTGCATTATTGGATGGCGTGAAGACTTGGCtgctgaaaaattgtaaaaagTGCGTACAGGCTGATCCTCCGACTCCAAAGAGTTTGGCTGCCTTGATCATTCAACTCATCCAGTTTCAAGAAGATAATTTAGGTAAAAATGTCAGCGAACCCGCGCTCACACGGTTGCCGATGCGGTGTTTCTTAGATTTCAAACCGGGTGGTGCTTTATGTCATATATTAGCGAGTgtgtataaatttaaaaatgaacaaGGTTGGAGGAGATTCGATTTTCAGGTCAGTAAGAGTCCATCAAGGAAAGACCGCAGTATCGAGATGTTCATCAATGTGAGAAACGCTTTGATACAGAACAAATGTTTGGCTCTTCCGCAAGTATACGTGCGACCCGAAGTGGATAAAAATACTCGAGATAAAGTAAAAAGTATCATAGAACGTCACGATGGTGAAATTATTGATAGCGAAGAAAAAGCTACTCACATAATTTATCCAACAACTGATCCTCTCGATGAGGAATATGCGAGAGCTGTATTTCGTAATAAAAATAATCTAACCATGTTACATTGGTACTATTTTCCGGATTCACACGATTCGTGGGAAAATGTAGAAATACCCGTAGATCCGCCCGAATCACCACCTTCCTACAACCCTAGTCAAAAATGGAAGGTATCTGCATCGTGGGTTCTGGAATTGGAACAGTATAACGAATGGATGTCCGAAGAAGATTATGAAGTGGACGATAATGGTCGAAAGAAAGTTCACAagTATCGCTTATCTGTTGACGATCTAATGGCAGCGACTGATCCGGATAGgacaaagaagaaacaaaaacgtAAACGGTCGCCCTCTCCTGACCGtaaacagaagagaaaaagTACCCGAGGCCCTTCTACTCCATCTACGCCGACAACGAGTGTCAAACGGAGTAAAACAGACGACGACAGTAGCACTGACGACTTGACTAAAGATATGGATGAACCGATTCCAGAACCGAACGTACAAGAAGTTCCTGTTAATAAATGTAATAATACGACGGTCACGTCTTCCAAAAAAGATACCGACTTACAGCCTATCAAAAGCGGAGCGCTTGCCGATTTGGACGAGGAAATGGAAAAACCAGAAGAAGTACCTGTTAGCAAAACGACTATCGAACCTACCAATGTAGAAAGCACCACCGCTCCGAATGATGATGGCGTTGAAGACAACGTAACCGAACAAACTCATCACATCATCATTCCCAGTTACGCAGCCTGGTTTGATTACAACTCCATTCATATGATTGAGAAGCGCGCTCTTCCCGAATTCTTCAATGGCAAGAACAAATCAAAAACGCCTGAAATCTATTTAGCGTATCGTAATTTCATGATCGATACTTACCGTTTGAATCCGACGGAATATCTTACGAGTACTGCGTCTCGACGAAATCTGGCTGGTGACGTGTGCGCTATCATGAGAGTACATGCCTTTCTCGAGCAGTGGGGTCTGATAAATTATCAGGTAGATGCGGATAGTCGACCGACCCCAATGGGACCTCCTCCTACTTCTCATTTCCACGTCCTTTCGGACACGCCGAGCGGCTTACAGCCGGTAAATCCTCCGAAGACACCGCAGCCATCAGCCGCTAAAACTTTGCTAGATTTGGAAAAACGACCGGAAGCGACGAAGAAAACTGATGGCATTGATTCTACCACTGGAAACTTTGGACTTCGACTCGATCAATACGGCAAACGAGCCGGTTTACTCAAGAATAAAGCAGCTGCTAATCATTGCCGCGACTGGACCGAACAGGAAACCCTATTATTGTTGGAAGCGTTGGAATTGTATAAAGATGATTGGAATAAAGTGTGCGAACACGTTGGCTCGAGAACGCAAGATGAGTGCATTTTACACTTCTTGAGATTACCAATCGAGGATCCATATTTGGAGGACTTTGAAAACGGTGGTGCTCTGGGTCCATTGGCTTACCAACCAATTCCATTCAGCAAGGCAGGGAACCCGATTATGTCGACTGTAGCATTTTTGGCCTCAGTAGTCGACCCGAGAATAGCGTCAACCGCGGCAAAAGCAGCTATGGAAGCGTTTGCGGAAATCAAAGATGAAGTTCCCGCGTCGTTGATGGATTCACACATCAAGAACGTAGAAGCTTCGCTCACTGATGGAAAATTTGATCCACAAGCCGGATTGACTCAAAGTGGAATTGCGGGTactgaaaaagaggaagatcaagaaaagaaaaaagaaacgtctGCTGAAGAACAGGCTAAAGACAAAGATTCAGTTCTCTCAGAAAAGCCATTGGTTGAGTCGACTGACgttccaaaagaaaaagaagaaccttCGAGCGAGGAAGCAGCTCCTGGACAACAAGTACCCAGTTCAGCCGCCTCTGTTATGACAGATATTCCCAAGAAAGAAGTTGACGCAAGTGACAGCGAGATGGAGGGCAAAGAACTCACTCCAGCTACCTTAACTTCAAAAGAAGAGCAATCTGATTGTCAGAAGGTTGTCAAGGATGCGCAATTACAGTCAGCTGCTGCTGCTGCCCTTGCGGCTGCAGCAGTCAAAGCTAAACATCTGGCTGCGGTAGAAGAGCGTAAAATTAAGTCGCTGGTTGCGTTGTTAGTTgaaacacaaatgaaaaaattggaaatcaaATTACGTCATTTTGAAGAGCTGGAAACAACAATGGAAAAGGAAAGAGAAGGTTTAGAATATCAGCGACAGCAGTTAATCACTGAAAGACAACAATTCCATTTAGAACAACTGAAAGCGGCTGAATTCCGAGCCAGGCAACAGGCGCAACAACGGTTAGCTAATGAACAGGCtcagcagcaacaacagcaacagcagcaacaacaacaacaacagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacaacaacacctgcaacagcaacaacaacttcaacagcagcagcagcagcaacaacaacaattgcaacagcaacaacaacaactgcatcagcagcagcaacatcagcagcagcaacagcaacaacaactgcaacaacagcagcaacaacaacaccagcagcagcaacaacaacaacaccagcAGCAGCTGCAACAACACCACCAACCGCAACAACCACCGCCGCCTATACAGCAACAGCCACCACAACAACTACCTCCTCAGCAGCAACAGTACCACCAACAGCCTTATCatcagcagcaacagcagccgCCAccacagcagcagcaacaacaaccaTTACCTCAGCACCatcctcctccttctcctcaACAGTATCAGCCACAATTACAACcccaacaacaacagcagccgCCACCACAGCCTCATCCCCCTCAACCTCCACCTCATGTGCAGCAACAACAGCCACCTTCTATGCAAATGCCGCCACATCCACCTCCACAACAGTATACGCATAATATGCCAACTCAGTAA
Protein Sequence
MLSALGPKKDGGPNVKFFECPETIALLDGVKTWLLKNCKKCVQADPPTPKSLAALIIQLIQFQEDNLGKNVSEPALTRLPMRCFLDFKPGGALCHILASVYKFKNEQGWRRFDFQVSKSPSRKDRSIEMFINVRNALIQNKCLALPQVYVRPEVDKNTRDKVKSIIERHDGEIIDSEEKATHIIYPTTDPLDEEYARAVFRNKNNLTMLHWYYFPDSHDSWENVEIPVDPPESPPSYNPSQKWKVSASWVLELEQYNEWMSEEDYEVDDNGRKKVHKYRLSVDDLMAATDPDRTKKKQKRKRSPSPDRKQKRKSTRGPSTPSTPTTSVKRSKTDDDSSTDDLTKDMDEPIPEPNVQEVPVNKCNNTTVTSSKKDTDLQPIKSGALADLDEEMEKPEEVPVSKTTIEPTNVESTTAPNDDGVEDNVTEQTHHIIIPSYAAWFDYNSIHMIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTASRRNLAGDVCAIMRVHAFLEQWGLINYQVDADSRPTPMGPPPTSHFHVLSDTPSGLQPVNPPKTPQPSAAKTLLDLEKRPEATKKTDGIDSTTGNFGLRLDQYGKRAGLLKNKAAANHCRDWTEQETLLLLEALELYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDFENGGALGPLAYQPIPFSKAGNPIMSTVAFLASVVDPRIASTAAKAAMEAFAEIKDEVPASLMDSHIKNVEASLTDGKFDPQAGLTQSGIAGTEKEEDQEKKKETSAEEQAKDKDSVLSEKPLVESTDVPKEKEEPSSEEAAPGQQVPSSAASVMTDIPKKEVDASDSEMEGKELTPATLTSKEEQSDCQKVVKDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEKEREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAQQRLANEQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLQQQQQLQQQQQQQQQQLQQQQQQLHQQQQHQQQQQQQQLQQQQQQQHQQQQQQQHQQQLQQHHQPQQPPPPIQQQPPQQLPPQQQQYHQQPYHQQQQQPPPQQQQQQPLPQHHPPPSPQQYQPQLQPQQQQQPPPQPHPPQPPPHVQQQQPPSMQMPPHPPPQQYTHNMPTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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