Basic Information

Gene Symbol
-
Assembly
GCA_035079395.1
Location
JAVHKZ010000003.1:15586167-15588820[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.1e-09 5.3e-06 26.5 0.0 2 42 19 59 18 62 0.87

Sequence Information

Coding Sequence
ATGCCACGGAAATACTGCAGAACACCTGGAGCTCGGCGATACGCAGATTATACGGAGAAAACGTTAGATGATGCTTTAGAGGCGATTTTAAAGCATGGAATGTCGAAAACGGAAGCATCTCGTGTGTATAATATCAGTTTACGGACTCTATACAATAAGATTCAGGCGAAAGAAGATGCTTCAGATTACGGGTTTCCGATTGATCGTACAGATTTACGTATGATTTGCTACGGCTTCGAAAAACGATTTCCTGCTATTAGTTTTCGCTACGCAAAGAATATAACGACCGATCGTGCTGCCGTtgacgaagaaaaattacgagctTACAAATCTGAGTTATCTGTTACCCTAGAAAATGTTCCTGCCGATCGTATATACAACTACGATGAGACCAACTCAAGTGACGATCCTGGGGCTAAGAGAGTTTATGTACGGCGTGGTTGTAAATACCCTGAACTAATCAGAAATCACTCGAAAGCATGTACATCGATGATGATGTGCGGCTCTGCCGCAGGACAGTTACTACCTTTGTACATTGTGTATAAAGCGGCCTTCGATAAAATTCGTATTATTTTCCTCATATGCAAAGTCCCCCCAATAGGGCACAGTATTTGTGACGGTTTGGAAACACCAGTGCAGTTAATTAACAAGACAGACCTCCAGCTCTTCGATGTAAACTTGACCATTCTGGTAAAAATTAATCCTGATGGCTTGAGCGAAGCTCGAAAGACGTATCTAGCGAAAGAAATTCGTCCTTTCTGCCCAGAGGAGGCAAAAGACATTCTTTGCCCTGCGCAGATTTCAGCAGTAGATACAGAGGCGACATTAACAAAGCCTACTAAAAGTCAATCAACAATTTCTAACGCTTGCCTTTCTCTTCCTCGTCGCCGCGGTCGGCCAAAGAAAGTAGTGCCACCATTGGAAAAGCTGCATTCGACTTTGATTTCAGATAGTGAAAACTCTGACACTCTTGATGAACCTGACATTCAATGA
Protein Sequence
MPRKYCRTPGARRYADYTEKTLDDALEAILKHGMSKTEASRVYNISLRTLYNKIQAKEDASDYGFPIDRTDLRMICYGFEKRFPAISFRYAKNITTDRAAVDEEKLRAYKSELSVTLENVPADRIYNYDETNSSDDPGAKRVYVRRGCKYPELIRNHSKACTSMMMCGSAAGQLLPLYIVYKAAFDKIRIIFLICKVPPIGHSICDGLETPVQLINKTDLQLFDVNLTILVKINPDGLSEARKTYLAKEIRPFCPEEAKDILCPAQISAVDTEATLTKPTKSQSTISNACLSLPRRRGRPKKVVPPLEKLHSTLISDSENSDTLDEPDIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-