Basic Information

Gene Symbol
-
Assembly
GCA_035079395.1
Location
JAVHKZ010000018.1:30723098-30746834[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.9e-09 1.9e-06 27.9 0.0 1 40 630 669 630 671 0.95
2 2 5.6 3.7e+03 -1.8 0.2 13 24 744 755 742 755 0.88

Sequence Information

Coding Sequence
ATGGAATACACCCATACGCCGGATTCTTATTCCGCCAAATATCCCCCTATCAATAAGGAGGAAGCCTGCAATCTTCCAGCGGATACTCAGTACCATCAACTGTACTCCATCAAACGCGACTCTGATTATACTTTCATCCAGACATTGAAAAGCAACAGGCCAATCTTCATCGCGACCATTGAACCAATGGAGCTCACCTGGGATGAATGGTCAAATGAGCAATACCTGGCGGATTATGCGTTTATGTTAGAACAGATTACGGGCCAAATATACTTCAAGATGACCAAGCGAGAAGAAGATCGGAAAATGGTGGAGTTTTACGAGCGTAAGGCCACCATAGTTTCGACCATCCAAGTTCCAAAAAATCCGTCTGATCCGAAGATTAAAAGTCTACCCGCAAGTCAACAAAATGGTCCGAGATTGTCGAAATATCCCTTGAATCGGTATCCAACCCAGTTGATCAAGGCATTCCAAGTTCCGAAGCGTCGATGGAAACGCCGACGATCGGGTGGGATGAACCTCGGCCAAACAAAGCTTCGACAAAGGAAGAAGTTGGTTCGAAGGCCAAGTTCCAAAAAATCCGACGTCCCAAAAGCTCCGACTCAACTGAAGTCATGTTTGCAAAAAACTTCAATGAGCCGAAACCTCATGAAAGGCGAAAGGTGGATGTGCCTGTTCGAGGTTGAGGCCATGAGGTTCAAGATGGTGAATCATTACGGCAGAGAACACCAGTTATTTTTCCGTTTACAGATGCCGAAGATAACGGCCATTTTTGGTTTCGAAAAGAGCTTCGACATTGTGGGGAAGATTTATTTCGACCTCACCACGAACCAAAATTATGTCACGACCTCCTTTCTGGCTAGATTCAAAGGACATTTTGATCCGACTCCGACTGAAGCTCCGATGATTGGCGGCAAGCATAAATTGGTGCCGCAGTACACGTCGAAGAAAGATTGTCCGGCGCTCCAATTCCAACGCGAGATCACTTTCCGTGTTGAGGACTTGGACACCGGGAAAATGAGTCGACTAATTGCCATAGAGGCGGTTGTTATTCACAACGATTCAATGGAAGATTCCTTGATTATCGGAGCCGACTTGATTGAACAGATGCAAATCAAGATCCGACAATTTAGTGCCTCCATTGAAGGCATCTGGAGAAGTTCCGACGGAACGAATGTTGTGGTCGGCTCGGCTACTGACAATAAAACCAATGTGTGGGCTCTTCGCTCAATGCAATTTCTGGATGACGATGATGACGTGACCTACGCGATTCCTACCGAGTTTTCCGATTTATCGCATCACGATAAACTTTTCGCTCTTCCTCCGGCGAAAACTGCTACAAGTGAAGGGGAGCCGCCGTTGCCAAACGTTGTTCTTACTGTCAATGATGCGGAAGCAGGAGCAAATAAAGTCAACAATGCTCTTGTAAATAATGAGGATATTGTGGTACCAAGTCCTATTGAACCTCTTCCTTCAGCGAAAGAAATTCAACAAGCTTTAGGTATTTCAAcggagaaagatgaagaagaagatcaaCACGTAATCGTTTCTATTCCTTTGGAGAAGATTTTTAATGTTccagttgaaaacaaaattgtcAGTGTTCCTGAACTAGTCAAATCAATTTCATCAAGAGCTGAAGAAGTTGACGAAGATGAAGATGATTATTTTTACAAGATGAAATCCAATCGACAGAAGAAACAGATTCTTTCCGATGACGATGACGAGGAAGGAGAAGgtggaaaaattCTAGGTATTCATTTGACAGATCCTATTGTTTACAGTATCAAATCTTTGGATGGTAAAGATATCTTGGTGATTTTACCCTTATCAAGCTGTTATTTTCGTCAAGAAATGAAACGAAATTGTCTGAAGACCACGAAATACTCGGAGGAAAACCTTAGCAATGCAGTTTTTGATGTTGTTCATAAAAGACTTTCATTCCGAAAGGCCCAGGTGAAATATCATGTACCGATTGCTACAATATACAACCGCATAAAAGgacGAAAAAACCCTATTGCGCTTTTGAAAGCTGGTCGTAAACCGGTGCTGACAAAAGAAGTAGAAGACGAATTATTCTGCTGCATTGTTGCTCGTTCGCGATTAAGATTCCCTTGTGATCGGCAAGAAATCAGATTTCTCATCTCGGAGTATGTGACCATCAACAATATTGACACGCCATTCAAGGATAATATACCAGGAAATCACTGGTATAACGGGTTCATGAAACGAAATAAACAACTGAGTCTTAAGAAAGCCCAGCAGTTCCCCAAAGTACGAGAAGACGCTCGAGATCCATGGGTGGTATATCATTTTTATGAGATGCTAGAAAACTGCTTTGAAGAAGCGCAGCTTCCGTCCGACAATGGagagtattttgttttcaattgcgACGAAACAGCGTTCAATTTGGATCCTGTGAAAGTTCGAGCGTTAGGTGTGAAAGGAGAACCATTGCATAGAGTTAGTGGAGCGGACAAAATTCGATTCAACCTTCATGGACCTCAGAAAATGACTATCCTGGAACTGAATAAGTATGTTGCTTCCAAAAATGGATGGATGGAGGAGCTTGTATTTTTCAACTGGTTCACATTAACCTTTGTACCATTTGTTGATGATGTGAGGTCGAGGCTAAATCTTCCTGATCAGGTCGCTGTATTGATTTATGATGGACATAAATCTCATTTTAGTCTTCGTATTATTGTAGAGGCGATTAGGAACAAAATTGTTCTGATCAAGTTTCCTAGTCATCTAACTGACCTGCTCCAGCCATTAGACAAGTCAGTGTTTTCAGCGCTCAAAAGGAGATGGGATGAAATCCTTGTGGATTATGGCCGTAAAAATATGGGTTTGGGTTCAATTTGTATACGAAAAGAGAACTTTGCCGAACTACTTGGCCAAGCTTGGACTGACGGGTTGACaccgaaaaatattaaaaatggttTCAATTCGATTGGGCTGTATCCTTTTGACGTGAAGAAATTTCCTGAATCAGTATTTGATCCGAATAAACTAAAGCTGTACAAGAAGGAGAGGATATTGCGTGGAAGTGTTCCTTCAACTTCATTGACGATCAAGTCGcctggaaaatttttaccagtGCAGACATCACAGTTTTCATCTTCGCCCAATATTTCATCATCTACTCCTAATGTTTCTCCTGCTAGCGCAAATGAGACAATTCTGGATCTGAGTCTCAAAGTGATACGCACGCCAACTAAAGCGACAGAAAAACAAGTAACTTCTATTGTAGAGATTTTTTCGAGAATGATCGAGAAGAATAAGCGTTCTGAACGACAAGATGAAGGAAATACTCAAGGAAAAAAGACAGTTCGGCGATTGAATTTACTAAAATATGGGGAAATTCTCACTCACGAATCAGTTGTTGAGAGATTCAAAACGGCTGAAGCTGATAAACAGAAGAAGGAACAGTTACTGGCAGAACGAAAACAAataagagaaaagaagagaattgagaaaGCGGCAGAGttgacaaagaagaaagaggagaaacaGAACAAACAGAAGAAACAGAAGCCCGTAGGAAAGAAAGGtcgaaagaagatgaaaaagccTGAAGTGGAAAGCGACAGTGATGTGGGTGTTGCGCTGCTTGATTCAGACGGGTCAGATTCTGATCGATCATATTCTGAATTACTGAATTCCATGAAGCAATCTACAGCAAAAAGATGTCGACAGAAGACAAAAAGTAATTGCGTACCTGCAAAAAAATCTCGAGTTCAAAATGAAGATGCAGAGAGCGCGTCAAATTCAGAAACAGCGTTTTCTAGCGCGTTACATTTGTTAGATGAAGATGAAACTTCTGCTgtCGAAAATCAACGATTTCCGACCACTCCGACGTTTAAGACCACTCCGAATATAATTGAAGATCCGACCATTTCTAAGTATATAAGCGACAAGATCCAAATTAGTCGGAAGTGTCCCGATATAATGGACATCGACCTAACTCCAACTGAGGAAATCCCTATCGACATGGAGACCCTCAGTTGGATGTTGGAATATATTACCGGCCAAATCTACTTCAAGATGGCCAAGCGAGAAGAGGATCGGAAAATGGTGGAGTTTTACGAGCGTAAGGCCaccaaagtttcaaaaattccgaCCGATCCGACGATCGAAAGTCCAACCGCACTGAAGGAAGAAGTTCCGACAAAAGTCGACCAATTTCGAGAATACAGTGATCGACTTGCAGCATCGATAAAGTTGATGGAAGAGGCGCAACTCGTGGCGAAGGctgaaaaagaagggaaaaagcCGAAGTCAACGAAATGGTACGTGATTGTCGAAACATCTCTTGAATCGGTAGCCAACCCACTCAATCAAGGCATTCCACGTTCCGAAGCGTCGATGGAAACGCCGACAATCGGGTGGGATGAACCTTGGCCAAAGAAAGCTTCGACAGAGGACGAGGTTGGTTCGGAGGCCATTTCAGCGGAATAA
Protein Sequence
MEYTHTPDSYSAKYPPINKEEACNLPADTQYHQLYSIKRDSDYTFIQTLKSNRPIFIATIEPMELTWDEWSNEQYLADYAFMLEQITGQIYFKMTKREEDRKMVEFYERKATIVSTIQVPKNPSDPKIKSLPASQQNGPRLSKYPLNRYPTQLIKAFQVPKRRWKRRRSGGMNLGQTKLRQRKKLVRRPSSKKSDVPKAPTQLKSCLQKTSMSRNLMKGERWMCLFEVEAMRFKMVNHYGREHQLFFRLQMPKITAIFGFEKSFDIVGKIYFDLTTNQNYVTTSFLARFKGHFDPTPTEAPMIGGKHKLVPQYTSKKDCPALQFQREITFRVEDLDTGKMSRLIAIEAVVIHNDSMEDSLIIGADLIEQMQIKIRQFSASIEGIWRSSDGTNVVVGSATDNKTNVWALRSMQFLDDDDDVTYAIPTEFSDLSHHDKLFALPPAKTATSEGEPPLPNVVLTVNDAEAGANKVNNALVNNEDIVVPSPIEPLPSAKEIQQALGISTEKDEEEDQHVIVSIPLEKIFNVPVENKIVSVPELVKSISSRAEEVDEDEDDYFYKMKSNRQKKQILSDDDDEEGEGGKILGIHLTDPIVYSIKSLDGKDILVILPLSSCYFRQEMKRNCLKTTKYSEENLSNAVFDVVHKRLSFRKAQVKYHVPIATIYNRIKGRKNPIALLKAGRKPVLTKEVEDELFCCIVARSRLRFPCDRQEIRFLISEYVTINNIDTPFKDNIPGNHWYNGFMKRNKQLSLKKAQQFPKVREDARDPWVVYHFYEMLENCFEEAQLPSDNGEYFVFNCDETAFNLDPVKVRALGVKGEPLHRVSGADKIRFNLHGPQKMTILELNKYVASKNGWMEELVFFNWFTLTFVPFVDDVRSRLNLPDQVAVLIYDGHKSHFSLRIIVEAIRNKIVLIKFPSHLTDLLQPLDKSVFSALKRRWDEILVDYGRKNMGLGSICIRKENFAELLGQAWTDGLTPKNIKNGFNSIGLYPFDVKKFPESVFDPNKLKLYKKERILRGSVPSTSLTIKSPGKFLPVQTSQFSSSPNISSSTPNVSPASANETILDLSLKVIRTPTKATEKQVTSIVEIFSRMIEKNKRSERQDEGNTQGKKTVRRLNLLKYGEILTHESVVERFKTAEADKQKKEQLLAERKQIREKKRIEKAAELTKKKEEKQNKQKKQKPVGKKGRKKMKKPEVESDSDVGVALLDSDGSDSDRSYSELLNSMKQSTAKRCRQKTKSNCVPAKKSRVQNEDAESASNSETAFSSALHLLDEDETSAVENQRFPTTPTFKTTPNIIEDPTISKYISDKIQISRKCPDIMDIDLTPTEEIPIDMETLSWMLEYITGQIYFKMAKREEDRKMVEFYERKATKVSKIPTDPTIESPTALKEEVPTKVDQFREYSDRLAASIKLMEEAQLVAKAEKEGKKPKSTKWYVIVETSLESVANPLNQGIPRSEASMETPTIGWDEPWPKKASTEDEVGSEAISAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-