Basic Information

Gene Symbol
clz9
Assembly
GCA_035079395.1
Location
JAVHKZ010000003.1:30903345-30912505[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.00044 0.29 11.3 0.0 5 41 22 58 20 60 0.81
2 2 1.9e-10 1.3e-07 31.7 0.1 7 39 973 1005 972 1009 0.93

Sequence Information

Coding Sequence
ATGGCTTTCAAACACAAAAGAATTGTTGGTTCCCGTCGGTATCACGATTATTCGTTAGATTGCTTAGAAAGAGCCATTGCAAGACTGAAGCAAGGAGCTGGAATCCGAGAAGTTGCCCGCGAAACAGGTATTCCCAAAAGTACATTGagtcgaaaaatgaagaataaaaatcctAAAGCATATGGTCGGCCGAAAGCTCTTAACGACATGGAGTTGAGGTATTTGCGAGATGGTTTGTTAGAATATGCCAAATGGGCGTGCCTGTTGACCCGTTCTGATGTACGATTAATTGTCCAAAACTATTTGAACGAGAGATCTCGCGTCGAAAAAAGATTCAAGGACAACATGCCAAGTTCTGCAtgggtcaaaaattttatcaaaaatgaacctgaactaAGTGAACGCCTGGGTGAAAATGTTTCGCGAGCGCGTATCAGTCTCACAGCTGAAATTGTGAATGAGTTCTTTGATAATCTTGAACAGCGTGTACAGGGTGTCGATCCAAAATTCGTGATTAATTATGATGAAACGTGCATGGTTGACGACCCAGGGAAAGAGGTTGTAATTGTTAGTCGGCGAGAAAAACACGCTAAGAGAATAATGGATtcttcaaaaagtggtacttcgGTAATGTTTACAGCATCCGCCGCTGGCAAGCTTCTGCCTCCTTATATATGCTACAAGTCAAAGAACGTATATCAGAGTTGGAAAGAGAATGGTCCAAAAGGTACTGGTTATACTTGTTCAAGTAGTGGATGGTTCAATGCGCAAGTTTTTGAAGCATGGTTTGATCATGTGATTGTTCcgtattgtaaaaaatttgatcctaCGTCAGCCGAAAAGAAGGTTATTATAGGCGACAATCTTGCATCTCACACCTCTATTACTGTTCTTACACGTTGTAAGAAATTGAATCTTCAATTCGTTCTTCTACCACCAAACAGTACAGGCGATACTCAACCATTAGATGTTGGTTACTTTCGTGGTCTCAAGTCTACTTGGCGGAAACAgattaaaaaatggaaagaaacgtTCAAAGGAGCTCtgccaaaagaaaaattccctcGTATATTGAAGCAAACATTGGATGAACTGGAAAAGGATGGACGGAATGAAAGGAATATTAATGGTGGTTTTAGAGGTTCCGGAATTTACCCCATAGATAGACAGGCAGTTTTGAAGAAAGTTCcgcagagaaaagaagaaactggaGAAATGCAGGAAGGGTGGACTAAATCTTTTAGTTTACCCCTGGAGAAGAGGAAAGCTGAAGCTTACGTTCGTCGCAAAAGAAAATTACGAGCAGCTCCTGGAGAAGATCTGGTAAACACTCTGACAGAAgaagagttgaatgaggtgagtGACTCAGACAGGAACTTATCAGATGAAGAAACGGCTGCAGTAGACTCTGATTTGTCACAGGCCGAGTCAGATAGCGAATCCAATTCTTCGCAGTCGGAGTCCGATGAAGAATCCAATTCTTCACAATCCGAGTCGGGTAAACAATCTGATTCTCCGCAGATTCAGTCAAATAGCAGTGATtccaaagacttggaaaatgagGAAACCACTGAGGAGGTTATTGATGTTCCTTTGCCACCTACCGTCAAGGAAGAAGATTTTGTAATTGCCAAGTTGATTTATCAGTTCGTAATGCCTGCCTCTAGGAATAAGATTGTACGAAAGTACTTTGAATACAAGAAGTCTGAGAACAAAAGCATTTGTAAAGTGAACGTTGTTGGAGAAGGTATTgcagaaagagaagaaaaccaaTGTGGCATTGTACTTAAGAATACGAAAGTGAGCAATTTGAGGTCTCACCTTCAAGCGCGTCATAAATCAACGTACGATTTATTGCTGGCAGAAGAGAAACGAAACTCGGAGCCCATCAAGAAGCAGACATCGTTGTTGACTTACTCCGATTCTATTAGTTTACAAGTTTCTCGTGTAGAAGTTATCAAAGGGTTACTTGCGTTAGTAACTGTAGATGGTAGACCGTTCAGTGCTTTGGAAGATGAGGGATTCACAATCGCCTTCAAACCCATTCTTCAACGATTGAAATTATCTTTTCATCGCTTAAACATCTCCACACTAATTCAATCGGCTGCCGAATACATCAAGAGGAAAATCCGTGAAGTTCTAAAGGATACTTTAGTATCAGCAAAAGTTGATGCAGTTAGTCGATTTAGCAGATCGTTTTTAGGCATCAACATTCAGgcCATTATTGATCACCAAATTGAACTCTTTGTGTTGGGTGTCCAAGAAATAAAGGTGGAGCATTCAGGGGCGAACATGAAGATTCTTCTTAACGACTGCCTTGCAAAGTACAACATTTTTCCCAAGCAGTCGTATTCGGTTACCAGTGATAATGGTTCCAATATGATCAAAATGACCGAGCTAGTAGATGCAGACTATCGAAATCTTCGTTACCAGGACATTCCTGAGATTAATTTGAACGACGAAGACGAACTTACACAATTTGTAGAATGTATCTGCGGTGATGATTGGGCGGATGACGAAATAATTTGTGTGAATTGCATAGCTCATACACTTCAGCTCGCTATCCTCGACTCATTAAAGAACGCATGGGAGGACGAAGGTGTTGAGAATTATGTTATACTAATTAAATCAGCGAGAGAATTGGTCAAGAATTTGCGTAAACAAAACAATCTGCTTTTGTTAACAGCGAAAGGGAAGTGCCGGCCAACCCTCGATGTAAAAACCCGATGGGGTTCAACATACAAAATGCTCCATGATTTATTCAAGATGAAGGAAGTATGCATTGAGGCGGTCGACCATGGTAACAGAGAATTGTttctgccagatgatacttgGAAAGGATTGATCATGGTTAGACAGTACAAAAGGAAGCCaggttctagaagatatctggACTTCAGTTCAAGTGACGAAGAAGCAGCGTTAAAGGCTATTCGAGATAAAAAAATTTCGGTTTCGCAGGCGGCCAGGGATTACAATATTTGTCGCATGACTCTATATCGAAGGTTAAAAGGTGAAAGGAAACGCCCTCCCGGAGGCCAGACGGTGTTATCAGccaaggaagaaaaaatgattgttGACAATATTCTAACTTGTGCAGATTGGGGTTACCCATTCACTATGAACGAGATACGGCTTCTTGTGAAAGATTACTTGGATGATAGTAATAGAACGACAAAGTTTAAAAATAACTATCCGGGATATGATTGGGGACGGAGTTTTCTCAAGCGTCATAAGGCGATGACTCTTCGTTTGGTAGAAAACCAGAAGGCAGCTCGAAGTAAAGTTGGTCCAGAAAacgttcgaaaatattttaataatttgcaAGTTAGCATTGAAGGAGTGCCTCCTGAGAATATAATAAACTACGATGAAACCGCTTTCGTAGATGACCCAGGTAGAGAAAAAGCTGTTGTACGTCGTAAGACAAAATATCCTATTGTCATTAGAGAAAGTTCCCGTCTTTCTGTATCAGTCATGATGGCTTGTTCGGCATCAGGTCATATGCTCCCACCATATATCGTTTACAAAAGTACGTGCATGTGGTCTTCCTGGATCATGGACAGTCTTTACGGTAGTCGGTACAACAGAACAAAATCAGGTTGGTTCGACGCCGTTTGTTTCGAAGATTGGTTTCGAAAAATTGCTCTGCGTTATCTGAAACATTTACCAGGTCGCAAAGTTATCATTGGAGATAACTTATCCAGCCACATTTCTTTAAGTGTCATCCAATCATGCGAGAAGTATAATATTTCGTTCATCCTCCTTCCTCCAAACGCTACGCATCTCCTACAACCACTTGATGTTTGTGTTTTTCGGCCTGTCAAGATCTCCTGGCGTAAAGTTGTAAAGAAATGGAAACAGTTGACGAGTTCTAGCAAAGCTGGTGGTAATCCAttcaaggaaaattttcctcgacTACTGAAAGAAACTCTCGAGCTTATTTCTAATCGAAGtgttaaaaatatttgtagTGGCTTTGCAGCTTGCGGAATTCACCCGTTCGACCCTGATGTGGTGCTCAAAAAATTCCCTGGGGAAGAGACATTTAATAAAGACGATTCGGCTGAATCCGTTTTACATGTATCGTTGGTCAGCATGTTACAAAGAGAACGGTTTGGCGGCGAAACTCCATCAAACCGAGGACGTAAGAAAAAGATACAAGTTTCGCCAGGAAAATCTGTCCGCGGAATTCATTTTGATAGCCAGGCACCAGTGACTTCCACTCCTGCTTCTCAAGTACAAGTACCGCTATCTTATTCGTCGGAGGATGACAGTAGTAGTGAATCCGGAATTTCGGATTTACTATCAGAAAGTGAAGAAGAGTACGAGGAACCGCAAgacgattttgaagaaattctagaGCTAGAAGAGGAAGTTATTGATGACAGCGCGCCTGACAATGAAGGAAGTTCATCAAATGGTGCTCCTGCAGAGAATGACGAGGGCAATTCTTCTAATCTGGCATTGAATTCATTTGTTGCTGCAACTTATCAATACTCTACTGGTAGTCGTCAACAAAGAGAAGACCATGTTCGATACTATATTGGGAGAAttgaagaagtaaatgatgaaatggTCAACATTatgtacatgaaaaaatatatgaacCGGTCAACTGAATATGTCTTCGTTAGCGCCTATGATAACGGAAATGAGAGAGTGGATGAAGATCAAGTGCCGATTTCGAGGATTAAGAAAGTACTTCACGCTCCAGAAATAAAGCGCGGTGgtcacatttttaaaaatactcaaaacattGAGTTCCTGactcaatttttgtaa
Protein Sequence
MAFKHKRIVGSRRYHDYSLDCLERAIARLKQGAGIREVARETGIPKSTLSRKMKNKNPKAYGRPKALNDMELRYLRDGLLEYAKWACLLTRSDVRLIVQNYLNERSRVEKRFKDNMPSSAWVKNFIKNEPELSERLGENVSRARISLTAEIVNEFFDNLEQRVQGVDPKFVINYDETCMVDDPGKEVVIVSRREKHAKRIMDSSKSGTSVMFTASAAGKLLPPYICYKSKNVYQSWKENGPKGTGYTCSSSGWFNAQVFEAWFDHVIVPYCKKFDPTSAEKKVIIGDNLASHTSITVLTRCKKLNLQFVLLPPNSTGDTQPLDVGYFRGLKSTWRKQIKKWKETFKGALPKEKFPRILKQTLDELEKDGRNERNINGGFRGSGIYPIDRQAVLKKVPQRKEETGEMQEGWTKSFSLPLEKRKAEAYVRRKRKLRAAPGEDLVNTLTEEELNEVSDSDRNLSDEETAAVDSDLSQAESDSESNSSQSESDEESNSSQSESGKQSDSPQIQSNSSDSKDLENEETTEEVIDVPLPPTVKEEDFVIAKLIYQFVMPASRNKIVRKYFEYKKSENKSICKVNVVGEGIAEREENQCGIVLKNTKVSNLRSHLQARHKSTYDLLLAEEKRNSEPIKKQTSLLTYSDSISLQVSRVEVIKGLLALVTVDGRPFSALEDEGFTIAFKPILQRLKLSFHRLNISTLIQSAAEYIKRKIREVLKDTLVSAKVDAVSRFSRSFLGINIQAIIDHQIELFVLGVQEIKVEHSGANMKILLNDCLAKYNIFPKQSYSVTSDNGSNMIKMTELVDADYRNLRYQDIPEINLNDEDELTQFVECICGDDWADDEIICVNCIAHTLQLAILDSLKNAWEDEGVENYVILIKSARELVKNLRKQNNLLLLTAKGKCRPTLDVKTRWGSTYKMLHDLFKMKEVCIEAVDHGNRELFLPDDTWKGLIMVRQYKRKPGSRRYLDFSSSDEEAALKAIRDKKISVSQAARDYNICRMTLYRRLKGERKRPPGGQTVLSAKEEKMIVDNILTCADWGYPFTMNEIRLLVKDYLDDSNRTTKFKNNYPGYDWGRSFLKRHKAMTLRLVENQKAARSKVGPENVRKYFNNLQVSIEGVPPENIINYDETAFVDDPGREKAVVRRKTKYPIVIRESSRLSVSVMMACSASGHMLPPYIVYKSTCMWSSWIMDSLYGSRYNRTKSGWFDAVCFEDWFRKIALRYLKHLPGRKVIIGDNLSSHISLSVIQSCEKYNISFILLPPNATHLLQPLDVCVFRPVKISWRKVVKKWKQLTSSSKAGGNPFKENFPRLLKETLELISNRSVKNICSGFAACGIHPFDPDVVLKKFPGEETFNKDDSAESVLHVSLVSMLQRERFGGETPSNRGRKKKIQVSPGKSVRGIHFDSQAPVTSTPASQVQVPLSYSSEDDSSSESGISDLLSESEEEYEEPQDDFEEILELEEEVIDDSAPDNEGSSSNGAPAENDEGNSSNLALNSFVAATYQYSTGSRQQREDHVRYYIGRIEEVNDEMVNIMYMKKYMNRSTEYVFVSAYDNGNERVDEDQVPISRIKKVLHAPEIKRGGHIFKNTQNIEFLTQFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-