Basic Information

Gene Symbol
ct
Assembly
GCA_035079395.1
Location
JAVHKZ010000028.1:16563-30206[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 1.4e-15 2.6e-12 47.0 0.0 31 75 174 219 168 222 0.94
2 5 4.5e-15 8.7e-12 45.4 0.0 31 75 263 308 251 311 0.94
3 5 6.4e-15 1.2e-11 44.9 0.0 31 75 352 397 345 398 0.94
4 5 4.7e-22 9.1e-19 67.7 0.0 24 76 397 450 393 453 0.94
5 5 3.5e-28 6.8e-25 87.4 0.1 3 76 590 664 588 667 0.96

Sequence Information

Coding Sequence
ATGAAATGGCAACTAACATTAACTTATACCCCAAGTGGTACCTCTACTCTGCTGGGAAATCCACCGCCGCCGTGCGTCGGGCCCACGGATTCGGGGGGGGGCCAAAGTTGCATTCTTGGCAATGATGCCACCGACCCTATTGCACAGGAGCAAGCAGCTGCGCAAAGGATGAACGCCACGCAAGATATGTATGATTCACCACTGTCACCTGACCCAATGGACCATGAACAATGCTCCTCAGTCACTGAAGAAGAACAACAAACTGTACTTATCTCTAGGATAACTGCACCAACCAATAGCGCCACGCCCACCGCTTCAGGAACAAACAGAACCCTGCCAGATCCGCTACCCCAGAAGAAAGCAGCAACAAATCCAAAGCCAATCAACAAGGCCGGGCCAAGGCCTCCGTGGACATGGCAGGGCTCTTCTGGTGGGTTGTTTTCCAATAGCTCCAAGTTCTTATCATCGCCCAAAATCGAAGAGATAGCTAATGCTTTCATGAAGAAATATTCAGATGTGTCGGTTCTTGGACTGTCTCAGGGTAGCGTTTCCGATTTGTTGGCCCGCCCAAAACCGAGGCACATGTTAACGCAAAAAGGACGCAAACCTTTCATACGCATGAAAATGTTTCTCAAAGACAACAACGCCATCCACAATTCTGTGAAGGCTGTACCTGTTGATGATCAAGTCTCTTTTGGTGGGTTGTTTTCCAATAGCTCCAAGTTCTTATCATCGCCCAAAATCGAAGAGATGGCTAAAGCTTTCATGAAGAAATATTCAGATGTGTCGGTTCTTGGACTGTCTCAGGGTAGCGTTTCCGATTTGTTGGCCCGCCCAAGACCGAGGCACATGTTAACGCAAAAAGGACGCAAACCTTTCATACGCATGAAAATGTTTCTCGAAGACAACAACGCCATCCACAATTCTGTGAAGGCTGTACCTGTTGATGATCAAGTCTCTTTTGGTGGGTTGTTTTCCAATAGCTCCAAGTTCTTATCATCGCCCAAAATCGAAGAGATGGCTAAAGCTTTCATGAAGAAATATTCAGATGTGTCGGTTCTTGGACTGTCTCAGGGTAGCGTTTCCGATTTGTTGGCCCGCCCAAGACCGAGGCACATGTTAACGCAAAAAGGACGCAAACCTTTCATACGCATGAAAATGTTTCTCGAAGACAACAACGCCATCCACAATCAACGATTATTCGGCGAGTCGGTTCTTGGACTGTCTCAGGGAAGCGTTTCCGATTTGTTGGCCCGCCCGAAACCGTGGCACATGTTAACGCAAAAAGGACGCGAACCTTTCATAcgcatgaaaatatttctcaaagacGACGACGCCGTCCACAAGTTAGTCGCTTCACAATACAAAATCGCGCCTGAGAAACTAATGAGGACCGGTGGTCATGGAGGACCAACGCAAATACCACCTACATCACTGGGTAAGCCGTTACCACCAACAAACTGCGGAAAAGTCACATCGATGATGGATCAGCTCAAGTCCGAAAATACGAACTCAGTCGTACGCGCAAGTTTACCGCATCCTTTCCTGCATCAGACTCCACCGCAAGTGCATCCTCCACCTCCGTCGCCCATTTTCTCAAATTCAACCTCGCATCAACTTTCTCCGATGGAACATTTCAAGAAGTACAATCTTTCAGCCCCCAATCATCAGCCCGTCAACGTTCTGTCCCCGTCGCATAATTTGAACGCCCTACGCAATATCAGTCAACACATTAGTCCTTCCGTATACAAAATGGCCGCCTTGACGCAGGAGCTCGATACCCAAACCATCACGACGAAGATGAAAGAAACCTTGCTGGCAACCAATATCGGCCAAGAGATTTTCAACGAAGCTGTCTTGGGTTTATCGCCAGGTTCAGTCAGCGAATTACTTTCAAAACCAAAGCCTTGGCATATGCTGAGTATCAAAGGACGCGAACCGTTCATTCGGATGCAGTTGTGGCTATCCGACAGTCACAATATCGAGAGGCTGCAAGCGTTGAAGAGCGAACGTCGCGAACAAAATAAACGAAGACGCGGCTCCGGCCAAGATAACAGCAGTGACACCTCCTCCAACGATACGTCCAAATTCTACGCCAGCAGCGCCAATTCGCCCCCGTCCGCCGCCAAAAAGCAACGAGTATTGTTCTCCGAGGAGCAGAAAAAGGCTCTACGACTGGCGTTCGCGTTGGATCCGTACCCGAGTGTTGCGACAAGCGAGTTTTTGGCGAACGAACTCAGCTTAGCGTCACGCACCATTACCAACTGGTTTCACAACCACCGAATGCGCTTAACGCAACACTCCCGGCAAGCGAACGAGCCACAAATGAATCGCGAACCGCAGAGCAGCGGTTTTGATCCTGTACAGTTCAGATTGCTGTTGAGTCAAAGGCTCGGCTTTTCGGCACTCTCGCTTCCCTTCCCGAATCCGTACTTCCAACCGAATCAAGAACTGGCAGCGCTCATGTCTCGCAACATGATACCTACTAGTGAGCAGTTGTCCGGATTGGATCTGAGCCTGAAAAGGGATATGAATTcggatgacgacgacgacgatatgAATAACGATAGTCATTTAGATTCGGACGATAGCGGTGACGAGAGAGACGCAGTTCCTGAGGTGACGCCTTCGATAATCGTGTCGCGCAGTTCGAGGCGAAAACCAGCCGCTCCTCAGAGGGTGAATCCAGACAGGCAAGAGGAGTCAGAAGTGATAATTAATGGCGTGTGCGTGATGCAGACGAACGACGCGAACAATTATAAGAAATCATTATCATTCAAAcattag
Protein Sequence
MKWQLTLTYTPSGTSTLLGNPPPPCVGPTDSGGGQSCILGNDATDPIAQEQAAAQRMNATQDMYDSPLSPDPMDHEQCSSVTEEEQQTVLISRITAPTNSATPTASGTNRTLPDPLPQKKAATNPKPINKAGPRPPWTWQGSSGGLFSNSSKFLSSPKIEEIANAFMKKYSDVSVLGLSQGSVSDLLARPKPRHMLTQKGRKPFIRMKMFLKDNNAIHNSVKAVPVDDQVSFGGLFSNSSKFLSSPKIEEMAKAFMKKYSDVSVLGLSQGSVSDLLARPRPRHMLTQKGRKPFIRMKMFLEDNNAIHNSVKAVPVDDQVSFGGLFSNSSKFLSSPKIEEMAKAFMKKYSDVSVLGLSQGSVSDLLARPRPRHMLTQKGRKPFIRMKMFLEDNNAIHNQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKIFLKDDDAVHKLVASQYKIAPEKLMRTGGHGGPTQIPPTSLGKPLPPTNCGKVTSMMDQLKSENTNSVVRASLPHPFLHQTPPQVHPPPPSPIFSNSTSHQLSPMEHFKKYNLSAPNHQPVNVLSPSHNLNALRNISQHISPSVYKMAALTQELDTQTITTKMKETLLATNIGQEIFNEAVLGLSPGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDSHNIERLQALKSERREQNKRRRGSGQDNSSDTSSNDTSKFYASSANSPPSAAKKQRVLFSEEQKKALRLAFALDPYPSVATSEFLANELSLASRTITNWFHNHRMRLTQHSRQANEPQMNREPQSSGFDPVQFRLLLSQRLGFSALSLPFPNPYFQPNQELAALMSRNMIPTSEQLSGLDLSLKRDMNSDDDDDDMNNDSHLDSDDSGDERDAVPEVTPSIIVSRSSRRKPAAPQRVNPDRQEESEVIINGVCVMQTNDANNYKKSLSFKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00170565;
90% Identity
iTF_00170565;
80% Identity
iTF_00170565;