Basic Information

Gene Symbol
stc_1
Assembly
GCA_963576565.1
Location
OY755041.1:124631015-124663498[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 7.9e+04 -5.8 3.2 6 10 844 848 841 848 0.55
2 14 3.4e-06 0.13 14.3 11.4 3 18 888 903 884 904 0.93
3 14 9.6e-09 0.00038 22.5 13.4 1 18 940 957 940 958 0.98
4 14 2 7.9e+04 -7.7 4.2 11 15 988 992 987 993 0.43
5 14 4.1e-10 1.6e-05 26.8 14.9 1 18 998 1015 998 1016 0.98
6 14 6.9e-07 0.027 16.5 16.2 4 19 1063 1078 1056 1078 0.87
7 14 2 7.9e+04 -4.1 2.0 5 10 1107 1112 1107 1112 0.93
8 14 0.0067 2.7e+02 3.8 9.3 1 11 1118 1128 1118 1129 0.96
9 14 2 7.9e+04 -4.2 0.8 4 10 1133 1139 1132 1139 0.69
10 14 3.4e-10 1.3e-05 27.1 12.9 1 18 1145 1162 1145 1163 0.97
11 14 2 7.9e+04 -5.2 1.8 6 10 1192 1196 1192 1196 0.90
12 14 0.016 6.3e+02 2.6 13.6 1 18 1202 1218 1202 1219 0.80
13 14 1e-07 0.004 19.2 18.1 1 18 1255 1273 1255 1277 0.96
14 14 0.021 8.2e+02 2.2 15.2 1 16 1284 1298 1284 1303 0.90

Sequence Information

Coding Sequence
ATGCCTTATAATAATACCTCAAACAGCCAAACCAATAATTCCAATTTCTACAACTATCCAGGACAGTTTTACAGCACCAATGATACTACTGTGGATAACACTGGAAATTACTTCCAAAACTCAAATTTTGAGGATCAGCTTCGAGGCAGTAGTTCCATATTTGACCCAAGCAGTTCAAGCCTTGTGCCTACAGCTCAGGAGTTTTATCCTGCTTCTTATAATGTCACCAGGAATCAAAGGTATGGCAGTGGACGGTTAGCCAGTTCAACCACCTTTGAAAACAGCTATGGAAACCAACAGTTTGGCTATACAAATGAATCTAGTAACTCCTTCCCAACTGAAACTCAACCTAGCTCAGCAGATACTGTACCTGCAAATGCCTATAAATCAAATTTAGAAAGTTCTGTGAGTGAAACTAATTTTGTAGAACCCAGTGGCACCCAATCtaatcaaaattcaaaaaaatctgaaaaaacCAGGGAAAGAAATGGGTATTCTAAAGCATACAGTAAAAATCGTTTTGAAAATAGATCAAGTTATGGAGATAACAAGAAACAGAGAGATTTTTATAGAGGAGGTAGTTCCAGAAATTTAGATGAAGTTAAAGAATCCAATTTTCAAGAagaaaaagaaattgaaaatcCATCTGGAAGTTCTAGTACCAAAAATTACTCTAGGTCAAAAAATAACCCCAGAAATTTGGTAAATGAGTTAAGAGAAGAAACACATGAAGCTGAAGATAACTCTGGTAGAAACAAAGGTTTAAATAGCAAAaataaaagcaaatttaaaaataatgaagATCATGATGAAAAAGATTTTGAATATGATTCGTTTCCTTCTAGTTTGAGGTAtggtttaaaaaacaaaacaagaaGTAATAATTATGGTGCAAGTTCAAGTAGAAGTTATGATAATCCCTATAGAGGAAGAGATGATAAttcctttaaaaataaaattgataatTCATATAAAGGTAGAGAGGATAATTCATATAAAAGTAGAGAGGATAATTCATATAATAAGAGAGAGGATAATTCCTATAAAACTAGAGGTGATTCATATAAAAGCAGAGAAGAAAGGGATGGTGATTTCTATAAAAGtaaaaatgataattcttaTAAAAGTAGGGGTgataatttatataaaaacagGGATGGAAGAAATGATAATTTTTATAAAGGTAAAGAAGATAATTCCTATAAAAATAAGGGTGATAATTTATCTAAAAGTAGAGAAGGAAGGGATGATAATTTCTATAAAAATAGAGATGATAATTCTTACAAAAATAAAGGTGATAATTCTTATAAAGGCAGAGAAGGAAGAGATGATAATTTTCATAAAGGTGCAGATgataattcttttaaaagtagGGGTGATAATTTATCTAAAAGTAGAGAAGGAAGGGAtgataatttttataaaagcaGAGATGATAATTCCTATAAAAGTAGGGGTGATAATTCTTCTAAAAATAAAGCAAACAGAGATGATGAATTTTATAAAGCTAGAGATGACAATTCCTATAAAAGTTATAATTCACCATCATACAAAAATCGTAGCGATAATTCAGCATCTAAAAGCAGAGATAATTCTAGAGAACATTCTAGAGAAAATGATAATAGTTGGGATAGTTATGATAATTCTTCTGCAAATGGTTCAAACTACAGAGGTGGGAATAGAGGGAAGGCATCTGGAAATTGGAGAAGCAAACCAAGCAAATATGTTGAGGAGAAAAAGGAGAGAAGATtgcgAACTGCAGATCTGTTACAAAGGGAGCGCCTCATTGACATGATCGACCGTCGTACCCTAGAATGCCTCGTCTGTTGCGAGAAAATCAAAACCAACGATAGGGTCTGGTCTTGTATGCAGTGCTACCACATCATGCACTTGAACTGCATATCCGCTTGGGCTAAATCATCAAAAGTTAATACCGACACTGACGGTAATACCGACACTGACGGTAATACCGACACTGACGGTAATACCGACACTGACGGTAATACCGACACTGACGGTAATACCGAAACTGACGATAATACCGACATTAACGGTTATACCGACACTGACGGTAATACCGACACTAACGTTAATGCCGACACTGACGGTAATAACAACACTGACGGTAATACCGACACTGACGGTAATACCGACACTGATGGTAACACCGAGACTGACGATTATACCGACACTGACGTTAATACCGTCACCGACTGTAATACCGACACTGATGGTAATACCGACACTGACGGTAACACCGGCACTGACGTTAATACGGTCACTGACTTTAATACCGTCACTGACCGTAATACCGACACTGACGGTAACACCGGCACTGACGTTAATTCCTACACTGACTCAAATACCGACACTGACGTAATACCGACACTGACGGTAATATCGATATTGACGGTAATACCGACACTGACGGTAATACCGACACTGACGGTAATACCGACACTGACGGTAATACCGACACTGACTGTAATACCGACACTGACGGTGGAAGAAAATTGGCGTTGTCCTGCCTGTCAAAACATCTGTTCCGAACTTCCAAAGCAATACGTATGCTACTGCGGTAAAGTGACGGATCCCAAGTTTGATCCAAACATAATTCCGCACGGATGCGGCGAGATGTGCCTGCGCAAAGGCCGGAATTGCGAGCACAAATGTATTATTTTGTGTCATCCTGGACCATGCCCTGACTGCAATATTATGgtcTCCAAAGCATGTGGCTGTGGTAAAACCTCTCAAACTGTCAAGTGTTCAACCGAGCTCGAAATCGTCTGCGACGCCATCTGTGCCAAAATGCTAGAATGTGGCATTCACGAATGCAATGACAAGTGTCACATTGGACCCTGTCCGCCTTGTGCCGAAATGATCGTCCAGGAATGTTATTGTGGGAAAACTGGAAGAAAGGTGCCTTGTACGTCAGAATATTCCGGCCAAAGTGTCTTCTGTTGCGACAACCCCTGTCAAAAACTGCTGTCCTGCGGAAACCACCGCTGCGAGAAACCGTGTCACGCGGGTGATTGTGGCCCTTGCGTCAGAGATATCAAAATCGTCAATTCCTGCCACTGCGGGAAAATGCCTCTGCCGGAAAATAGGGTGTCGTGTTTGGATCCTATTCCCTGCTGTGATAAGaTCTGTGGTAAAATCCTGCCCTGCGGCCAGCCGAGTAAACCTCACTCGTGTCAAGAGAAATGTCACGATGGCAAGTGTCCCCCCTGTCCCCTCACGACCGTGGTACGCTGCCGATGCGGTCACATGGACAAGGAAATGGCCTGTCAAAAATTGACAACCAAAGCTGACGACGCCCGTTGCGAGAAGAAGTGTAATAAGAAACGCCTTTGTGGCAAACACAAATGCAACCAGCGGTGTTGCATCGAAATGGAACACTTCTGTCCGTTGCCGTGCAACCACAGCCTGTCGTGCGGGTTGCATAGATGCGAACGCACCTGTCATTCGGGCCGTTGTCCGCCATGTTTGGAAAGTAGCTTCGAAGAGTTGCACTGCGAGTGTGGAGCTAGCGTCATTTATCCCCCGgTGCCTTGTGGAACAAAGCCACCAATTTGTAAGGAACCATGTTCGAGAAACAGAGATTGTGGTCACCCTCCAAACCATGATTGTCATTCCGGTCCGTGTCCGTCATGTTTTGTTCTCACCAAGAGATGGTGCTATGGCAATCACGAACAACGTGCCACCATACCTTGTCACCAGAAAAACTTCAGCTGCGGCCTACCCTGCGGCAAATCGATGCCCTGCGGCCGCCACAAGTGCACGAAACCTTGTCACGAGGGGGAATGTCCCCTGCCCTGCGCGCAGCCTTGCACAACGCCTCGAATACTCTGCGGACACCCTTGCGGAAAGCCCTGTCATGATCCTCCCTGTCCTGAAAGCTATTGCAGGCAATTGGTTCCGATTACGTGCCAATGCGGTCTCCAGAAAGGTTCCAGACCCTGTACCGAGGTGGCTGACGAGTTCAGAAACATCGAGATGGCTCAATTGAAGGAAAAAATGGAGAGTATGTCGGTGCCCGATCAAACGATTGATATTTCGGACATTGTTGCCAAATCTAAGAGACCTACTGTCCTTAAAATATTGGAATGTAATGATGAATGCAAAACCCTGGAAAGAAACCGAAGACTGGCGATAGGACTGCAGATCCGCAACCCTGATTTAAGCCAGAAACTGACACCAAGATACTCAGATTTTATGAAGCAATGGGCGAAAAAAGACCCCCACTTTTGTCGAAAAGTCCACGACAAACTGACAGAATTAGTCCAATTGGCGAAACAAAGCAAACAAAAGTCAAGATCATATTCTTTTGAGTCAATGAACAGGGATAAACGTCATTTTATTCACGAATATGCCGAGCATTTTGGGTGTGACAGCGCAGCTTACGATCAGGAACCCAACAGGAATGTCGTGGCAACTGCTACCAAAGACAAATCTTGGCTTCCAAGTTTTAGTTTGTTGGAAGTTATCCAACGCGAGAATGGACAAAGAAAAGTTCCAGGACCGATTCTAGCTAGTGGCTCCTCCTCAAAATCTGAAAGTGTATCTTTGAAACTCACCAGCCGAGCTCAGAAACCTACCGCTGAAAAATCCGAGGAGGGTGCGTTCACAAATCCTTGGATTTCTAAAACTTCCGCGGATAATGATGAGAACGACAGGTATTTTAATAATCCGTGA
Protein Sequence
MPYNNTSNSQTNNSNFYNYPGQFYSTNDTTVDNTGNYFQNSNFEDQLRGSSSIFDPSSSSLVPTAQEFYPASYNVTRNQRYGSGRLASSTTFENSYGNQQFGYTNESSNSFPTETQPSSADTVPANAYKSNLESSVSETNFVEPSGTQSNQNSKKSEKTRERNGYSKAYSKNRFENRSSYGDNKKQRDFYRGGSSRNLDEVKESNFQEEKEIENPSGSSSTKNYSRSKNNPRNLVNELREETHEAEDNSGRNKGLNSKNKSKFKNNEDHDEKDFEYDSFPSSLRYGLKNKTRSNNYGASSSRSYDNPYRGRDDNSFKNKIDNSYKGREDNSYKSREDNSYNKREDNSYKTRGDSYKSREERDGDFYKSKNDNSYKSRGDNLYKNRDGRNDNFYKGKEDNSYKNKGDNLSKSREGRDDNFYKNRDDNSYKNKGDNSYKGREGRDDNFHKGADDNSFKSRGDNLSKSREGRDDNFYKSRDDNSYKSRGDNSSKNKANRDDEFYKARDDNSYKSYNSPSYKNRSDNSASKSRDNSREHSRENDNSWDSYDNSSANGSNYRGGNRGKASGNWRSKPSKYVEEKKERRLRTADLLQRERLIDMIDRRTLECLVCCEKIKTNDRVWSCMQCYHIMHLNCISAWAKSSKVNTDTDGNTDTDGNTDTDGNTDTDGNTDTDGNTETDDNTDINGYTDTDGNTDTNVNADTDGNNNTDGNTDTDGNTDTDGNTETDDYTDTDVNTVTDCNTDTDGNTDTDGNTGTDVNTVTDFNTVTDRNTDTDGNTGTDVNSYTDSNTDTDVIPTLTVISILTVIPTLTVIPTLTVIPTLTVIPTLTVIPTLTVEENWRCPACQNICSELPKQYVCYCGKVTDPKFDPNIIPHGCGEMCLRKGRNCEHKCIILCHPGPCPDCNIMVSKACGCGKTSQTVKCSTELEIVCDAICAKMLECGIHECNDKCHIGPCPPCAEMIVQECYCGKTGRKVPCTSEYSGQSVFCCDNPCQKLLSCGNHRCEKPCHAGDCGPCVRDIKIVNSCHCGKMPLPENRVSCLDPIPCCDKICGKILPCGQPSKPHSCQEKCHDGKCPPCPLTTVVRCRCGHMDKEMACQKLTTKADDARCEKKCNKKRLCGKHKCNQRCCIEMEHFCPLPCNHSLSCGLHRCERTCHSGRCPPCLESSFEELHCECGASVIYPPVPCGTKPPICKEPCSRNRDCGHPPNHDCHSGPCPSCFVLTKRWCYGNHEQRATIPCHQKNFSCGLPCGKSMPCGRHKCTKPCHEGECPLPCAQPCTTPRILCGHPCGKPCHDPPCPESYCRQLVPITCQCGLQKGSRPCTEVADEFRNIEMAQLKEKMESMSVPDQTIDISDIVAKSKRPTVLKILECNDECKTLERNRRLAIGLQIRNPDLSQKLTPRYSDFMKQWAKKDPHFCRKVHDKLTELVQLAKQSKQKSRSYSFESMNRDKRHFIHEYAEHFGCDSAAYDQEPNRNVVATATKDKSWLPSFSLLEVIQRENGQRKVPGPILASGSSSKSESVSLKLTSRAQKPTAEKSEEGAFTNPWISKTSADNDENDRYFNNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-