Aaen058894.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755045.1:30682728-30685574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 2e+02 4.8 0.2 1 20 165 184 165 188 0.93 2 14 2.1 2.5e+02 4.4 4.7 1 23 197 219 197 219 0.97 3 14 0.009 1.1 11.9 3.0 2 23 260 281 259 281 0.97 4 14 3.2 4e+02 3.8 1.3 1 23 291 314 291 314 0.87 5 14 8.7 1.1e+03 2.5 5.8 1 21 357 377 357 379 0.90 6 14 9.8e-06 0.0012 21.2 3.4 3 23 392 412 391 412 0.97 7 14 0.017 2.1 11.0 2.5 1 23 422 444 422 444 0.98 8 14 0.03 3.7 10.2 0.1 1 23 450 472 450 472 0.95 9 14 0.00046 0.056 16.0 2.9 1 23 481 504 481 504 0.98 10 14 0.0086 1.1 11.9 1.8 1 23 517 539 517 539 0.99 11 14 1.8 2.2e+02 4.6 2.0 3 23 552 572 550 572 0.95 12 14 0.0047 0.58 12.8 1.1 1 23 581 605 581 605 0.98 13 14 1.7 2.1e+02 4.7 4.4 1 23 614 636 614 636 0.98 14 14 0.035 4.3 10.0 5.1 1 23 645 668 645 668 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCAGCTTTCTTGGAGATAAACGAGCCCAAAGAAGACTCTATATTTGAAGACTTTCTTTCACTGAAAGACAAAACAGAGAGAGTTAAATTGTGGTCAGAAGATATTTCCAAAGGAAAAGAGAAAGATGAAAGCATTAAGGATGAACTAAAGGAGGAAGATGTTGTTACCATTTCAGTGCAGGATGTTCTTCAGGGAGTGGAATGCTCCATAAAAGAGGATCCAGAAAGTGATCGAAAGTCAGCTGAAGTCACAACACACAGTGAGCAGTTTGAAAGTCACTTGGAAAAAAATTACAGCACAAATTTCGAAAAGGACCATATTGAAGATttgaaaaacctttttaaagaaaataacttGGATGTTGAAAGACAAAAGTTTTATCAACAAATATTTAATGATATTTTGGAGAGAACTAGTCAAAAAAAGCTAGATGATCTCAGACAGCAGTATCTTGAACATCTCCATCAAATTTCTGATGTTGAAATATTTATATGCTCAAATTGTGAGTACCAAACTCTCAACAAAGCCAATCTGAAGAGTCATCTTTGGATCATCCATAAAAGTgaattagaattaaaaatttttaagtgtttaagTTGTACATATAAGTCAAAAAGTCTGaatcttttaaaaaaccatttaaCCCATCACAAAGAAGAAGACAGTTCTAGTGATTATGATAACTATAATAATGATAGGTCAAGTTCGCCTGAAGATTTAAAAAAGGATGTTAAAAAACGTAAAGTTAGAAAAAGGACTAGTATAACAAATCAGTGTGATTTATGTAATTACAAATCgaacaacaaaaaacaactaaaaaccCATAAAGAAACTCATTTTACAATAGCagataacattaaaaaatttaaatgttacaAATGTGATTATGATTCTCGTGATAAAATCATTATCCAAAAGCATCTGTTAAAACAACATgatattaaaacattaaacatagAAAAAAGAATCTTAAAGTGTAATGTCTGTAACTACACTACACTTTGCAATTTATCTTACAAATGTCACACCTTATCTCATAAAAATCCAGATGAAATAGAATGGTATAATTGTACACTTTGtgattttaaaactaaacacaAAAAGAATCTACCTCTCCATTTAAAATGCCATAATCCCGAAGCCCGCCAActagagaaaaaaaatatgtgtgaaGTGTGCAGCAAGACGTTTTACAGGCGCAGTCATCTTCAACGACATTTGCTTAGTCATAAAACTATTGACGAAGTCACCGAAATTTTTGAGTGTGATCAGTGTgcttttaaaactaaaaacaagGCTTGTCTGAAACAACACATGGATGTACACAGCAACGTAAAAAAATATGTCTGTGATATTTGTGGTTACCAAGGCAACCGCAAAGGCAACTATGATCTTCACGTGTTGGCCCACAAAGATAAGGCTGAAGCTGAGTGGTATTCTTGTAATGTATGTAGCTACAAAACCAAGAATAAATACAGGTTAAATCGACATTTAAAGACAGGACACTCGAGTTCCGCCCGGGATGTAGGTTACAATTTGGATTACAGCTGTTTTGAATGCAACATTGAATTGAAAGACAGAAAAACTTACAAGGATCATCTGAAAACTCATGACAATCCAGAAGAAATCGAAAGAAAACGGCTAGCTTGTCAGTTTTGCGAATATCGAACCAAACACAAGGCTTTCCTAGACTTACACACACTCAGTCACAAGCGGGCAGATGAAGTTGAAAGTTTTAAGTGTGATCAACCCGGTTGTGACTTCCGAAGTAAGTTTAAAATGAGTCTAAAAGCCCATATGTTACGCCATAAAGATCCTAGCGAATTAACTTACTATAAATGCGATGTTTGCGGACACCAAAGCAGGTTAAAATGGAGTCACAAACTTCACTTACGAACGCACAAAAGCATGAATGAGGTAGAAATATTTAATTGCGACATTTGTAGTTATCACACCAAGTTTAAAGCTTATTTGAAACAGCATTTGAAAAAGAGGCATGGAATTATGACTATGAGGGTTAGAATGAAAAACTAA
- Protein Sequence
- MAAAFLEINEPKEDSIFEDFLSLKDKTERVKLWSEDISKGKEKDESIKDELKEEDVVTISVQDVLQGVECSIKEDPESDRKSAEVTTHSEQFESHLEKNYSTNFEKDHIEDLKNLFKENNLDVERQKFYQQIFNDILERTSQKKLDDLRQQYLEHLHQISDVEIFICSNCEYQTLNKANLKSHLWIIHKSELELKIFKCLSCTYKSKSLNLLKNHLTHHKEEDSSSDYDNYNNDRSSSPEDLKKDVKKRKVRKRTSITNQCDLCNYKSNNKKQLKTHKETHFTIADNIKKFKCYKCDYDSRDKIIIQKHLLKQHDIKTLNIEKRILKCNVCNYTTLCNLSYKCHTLSHKNPDEIEWYNCTLCDFKTKHKKNLPLHLKCHNPEARQLEKKNMCEVCSKTFYRRSHLQRHLLSHKTIDEVTEIFECDQCAFKTKNKACLKQHMDVHSNVKKYVCDICGYQGNRKGNYDLHVLAHKDKAEAEWYSCNVCSYKTKNKYRLNRHLKTGHSSSARDVGYNLDYSCFECNIELKDRKTYKDHLKTHDNPEEIERKRLACQFCEYRTKHKAFLDLHTLSHKRADEVESFKCDQPGCDFRSKFKMSLKAHMLRHKDPSELTYYKCDVCGHQSRLKWSHKLHLRTHKSMNEVEIFNCDICSYHTKFKAYLKQHLKKRHGIMTMRVRMKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -