Aaen062258.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755046.1:1170011-1172833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.023 2.9 10.6 1.8 1 23 13 36 13 36 0.94 2 23 0.0036 0.44 13.1 1.8 2 23 41 63 40 63 0.94 3 23 2.5 3.1e+02 4.2 0.5 1 22 70 93 70 96 0.90 4 23 0.0079 0.97 12.1 3.0 1 19 114 132 114 133 0.98 5 23 0.012 1.5 11.4 1.2 1 23 145 167 145 167 0.97 6 23 0.0022 0.28 13.8 3.9 1 23 176 198 176 198 0.98 7 23 0.22 27 7.5 2.4 2 23 205 228 204 228 0.93 8 23 0.0054 0.66 12.6 2.9 1 23 235 257 235 257 0.98 9 23 0.035 4.3 10.0 0.6 1 21 266 286 266 287 0.95 10 23 2 2.5e+02 4.5 2.7 1 23 311 334 311 334 0.94 11 23 0.0056 0.68 12.5 4.7 1 23 343 365 343 365 0.98 12 23 0.17 21 7.8 4.9 2 23 373 394 372 394 0.97 13 23 0.0057 0.7 12.5 3.2 1 23 403 425 403 425 0.95 14 23 3.2 3.9e+02 3.9 4.3 1 23 452 475 452 475 0.96 15 23 0.53 65 6.3 3.0 1 23 484 506 484 506 0.98 16 23 5.5 6.7e+02 3.1 7.5 1 23 515 540 515 540 0.91 17 23 0.062 7.6 9.2 4.4 2 21 550 569 549 572 0.94 18 23 1.3 1.6e+02 5.1 3.0 1 23 581 604 581 604 0.97 19 23 2.7 3.3e+02 4.1 1.2 1 23 611 634 611 634 0.80 20 23 0.0027 0.33 13.5 4.0 1 23 693 715 693 715 0.98 21 23 0.039 4.8 9.9 0.9 2 23 756 778 755 778 0.94 22 23 0.056 6.9 9.4 2.4 1 23 787 810 787 810 0.95 23 23 0.045 5.5 9.7 0.5 2 23 816 838 815 838 0.96
Sequence Information
- Coding Sequence
- atggAGGACAAAGATGTCCTGGAGGACATCAAAATATTTCAGTGCAATTCCTGCGACTTCAATACAAAGTATCCGCACAACTTGGACAGACATCGGCTTGCAGCTCACCAAAATGTTCAACAATGTTCTAAATGTgatttttcaacaaaatataaaaacaaccTGATGAGACACGAAGAAAAGGTCcacgcaaaaaatataaattcatTCAAATGTGTAATTTCTGATTGCAAGTTTGAAACAAAGTATGAGGAAAGCCTAGAAACACACTATGAAAGTGCCAAACATAGAATGAAAAAAGATGATAGTTTTTACGAATACATTAAAGACACCGAAATGTATAAATGTAAAGATTGTGACCATCGAACGAAGTATAAACGGGATTTAGAACGTCATTCTTGGTTACATAAGTCAGCTGACGAATTAACTTGGTTCAACTGTAAAAAATGCGACTATTCTACTCTTTATAAAGATGGTTTGAAAAAGCATATCTTGATTCATCGAAATCCGGATGAAATAGAAATGTTTTATTGTTATCACTGCGATTTCAAGAGTAAAGATAAATCGTATTTAATCATACATATTAAATCACACAACCCGGACGATTTACTTAAATGTCAAACACCAGGCTGTAACTACAAAACCGCGAACAAAAAGTATTTCAAACATCATTTAATTCTACACCAAATCCCATCCGATTTATATTCTTGTGAACAGTGTGAATTTACAACGAAACATGAAAGATCACTTGAACAGCATATGAATAATCATGAAAAGAAACGTGCTGTTCAgatttttaaatgtaaatattgTGACGTGGAATCTAATAACAAAACGAAAATGTCCAGGCATATAATTTCGTGCGAAAAAAACGTGAATGTCGAAGATAAAACCAATGTATTCTCTGAGTACGATATTgaaaatgatatttttaaatGCAAAGTGTGCGAATATCGGAACAAAAGcaaatatcaaataaaaaaccattttttaataaatcacGAGGATCCAGACCGCGTAGAAATATTTTCCTGCACTCAATgtaagtttgaaacaaaaaccAAATCGCATTTAACTGGTCATCAAAAAATTCATCAAGAACCTGCCCTTTGGCTGAAATGTGCTCACTGTAAATTTAAAACAAGATACAAAGAAAGTCTAAGtatgcatttaaaaaaacacgAGAATCCGGAATATGTTGAATATTTTTATTGCGACCAGTGTGAATATAAAAGTTTTCAGAAAAGTAACTTAAACACACATAAAAAGATTCACAGACCGAAAGTGAAAACAAACAAGTGTGACATTTGCAAGAAAGAACACGCTTTGGAGTCTGTTCAGAAAGGAAAGACATATACATGTTTCCTGTGTGATTTTCAATCTGTTCATCTAAGTAGTTATAAAGAACACAAGCTAAAGTTTCACACAAATACAGACGGTGAACCCTTGTTTAGTTGCCCTCATTGTTTGTATTCAAATAAACGAAAAGATTATATTAAACTTCATTTGTTAACACACAAATCAATAAACGAAGCCGTTATTTATAAATGTTGTGATAAGAATTGTAAATTTGAAACCAAGCATAAAGcatatttaaagaaacattACTATATGCTTCACGAAGatgaaaaaaatgttaatatatTGGAATGTAAAAAATGTGATtacaaaactaaaagaagtGAATATCTCTATAAACACCTTAAATGCATGCACACTGATGATTCCAAGATAACGTGGTATAAATGTGACACGTGTCTATACAAAACCATGCATAAAGGCGGGATAAAATCACACATGCTGCGTCGCCATTCTGTCAAAAACAAAGTATTTAGATGTCCCGATTgcaaatataaaactttaaatgaTAAATACATGATTAAACATGTCAAGGGAACGCACGGAAAAATCtacgaaaaaaaatcaattaatgtTGAAGAATTTcatagtaaaaaatttaactataaCCAGAAAGACACATACTCGTGTTTTCTGTGCGAATTTGCGACAAATTCTTATAAAGCTATTGTCGAACACAATGGGATATTTCATACTGATGCCAGTGGACAACCTTTATATAAGTGCCCACATTGTTCGTTCTCTAGAAGGAGAAaagattatttaaaaatgcatgTTTTATCACACAGCTTGCAAAAGGCAGATATGTTAAGGTGTTTAGAAGAAAATTGTGGGTTTGAAACAAAATATAAACGTGGCATAAGAAGGCACAAATGCCCAGAATTTGAAGAATCCGCGGAAATCCTAAAATGTTCTAAATGTAATTATCAAACAAAATCAGAATCATATCTTGATAAACATGCTTTAATTAATCACGCGGATTCATCTCAACGGGCTTGTTACGAATGCTACCAGTGCTCGTTtaaaacaagaacaaaaaatttattaaaatcacacATTACAAACCTACATCAAACCAAAGTCTTAAATTGTCCTATTTGTGAATACAAGACAGTGTCCGAAAAATATATCACACGACATGTCAAAACAAAACACGATGGAAAATCAAATGTAATAGAAATAATGCAGAACAATTCTAACAATGAGTTTAATGCAAAACATAACAAACAAAGTCAAGAGCAAAGCTCAGTTGACGTGAACGAAAATGAATATACAATAGCAGAACAAGACTTAAGCGAAATGAAAATAGATATAGATGAAGATGAAAATTACAATACTTATTTTAACAGTGTAACTGAAAATGTTAAACTAGAGGACTGCGACAATAATGTTAAAAGTATTTCACTccttaatgaaataaataaagctGAAATACTGGCTGATCCAAAAATGGAAATAGACTAA
- Protein Sequence
- MEDKDVLEDIKIFQCNSCDFNTKYPHNLDRHRLAAHQNVQQCSKCDFSTKYKNNLMRHEEKVHAKNINSFKCVISDCKFETKYEESLETHYESAKHRMKKDDSFYEYIKDTEMYKCKDCDHRTKYKRDLERHSWLHKSADELTWFNCKKCDYSTLYKDGLKKHILIHRNPDEIEMFYCYHCDFKSKDKSYLIIHIKSHNPDDLLKCQTPGCNYKTANKKYFKHHLILHQIPSDLYSCEQCEFTTKHERSLEQHMNNHEKKRAVQIFKCKYCDVESNNKTKMSRHIISCEKNVNVEDKTNVFSEYDIENDIFKCKVCEYRNKSKYQIKNHFLINHEDPDRVEIFSCTQCKFETKTKSHLTGHQKIHQEPALWLKCAHCKFKTRYKESLSMHLKKHENPEYVEYFYCDQCEYKSFQKSNLNTHKKIHRPKVKTNKCDICKKEHALESVQKGKTYTCFLCDFQSVHLSSYKEHKLKFHTNTDGEPLFSCPHCLYSNKRKDYIKLHLLTHKSINEAVIYKCCDKNCKFETKHKAYLKKHYYMLHEDEKNVNILECKKCDYKTKRSEYLYKHLKCMHTDDSKITWYKCDTCLYKTMHKGGIKSHMLRRHSVKNKVFRCPDCKYKTLNDKYMIKHVKGTHGKIYEKKSINVEEFHSKKFNYNQKDTYSCFLCEFATNSYKAIVEHNGIFHTDASGQPLYKCPHCSFSRRRKDYLKMHVLSHSLQKADMLRCLEENCGFETKYKRGIRRHKCPEFEESAEILKCSKCNYQTKSESYLDKHALINHADSSQRACYECYQCSFKTRTKNLLKSHITNLHQTKVLNCPICEYKTVSEKYITRHVKTKHDGKSNVIEIMQNNSNNEFNAKHNKQSQEQSSVDVNENEYTIAEQDLSEMKIDIDEDENYNTYFNSVTENVKLEDCDNNVKSISLLNEINKAEILADPKMEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -