Aaen058911.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755045.1:30832120-30836381[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.61 74 6.1 0.4 1 20 155 174 155 178 0.94 2 13 1.8 2.2e+02 4.6 2.8 1 23 187 209 187 209 0.96 3 13 0.06 7.4 9.3 3.8 3 23 247 267 246 267 0.98 4 13 0.35 43 6.9 0.5 2 23 313 334 312 334 0.97 5 13 0.0015 0.19 14.3 2.4 1 23 343 365 343 365 0.98 6 13 0.0001 0.012 18.0 0.8 1 23 374 396 374 396 0.95 7 13 0.0019 0.24 14.0 5.7 1 23 406 428 406 428 0.98 8 13 0.0019 0.24 14.0 0.2 1 23 434 456 434 456 0.98 9 13 0.00039 0.047 16.2 3.6 1 23 465 488 465 488 0.97 10 13 0.17 21 7.9 0.3 3 23 537 557 535 557 0.95 11 13 0.35 42 6.9 0.5 1 23 566 590 566 590 0.97 12 13 0.0007 0.085 15.4 0.4 1 23 599 621 599 621 0.99 13 13 0.0027 0.33 13.5 2.8 1 23 630 653 630 653 0.98
Sequence Information
- Coding Sequence
- ATGGCAAAAATTGGAGCACACTTAACTGAATCCCAAGGTAAACATATTTATGACAGTCTGCTGTCATTGGACGAAAAAATAGAAATTGAAGAAACTGGCGTTCATCAAGAAGATCATAGTGTTGAGATTGAGTTAAAGGACATTGTCAAGATAGATTTGGAGTGTGTTAAAGAGGACTTAAGctttatAGAAAAGAACATAGAAATAGAAAGTACAGCACCAAAATCGTTAAACAATCAAGAATTTGAAAGCCATGTCGAAAAGAACTACTCTACTAACTTTATAAAAGACCACACTGAAGATATTAAATCCCTTTTTAAAGAAGACAATTTATATTTTGAAACTCAGAAGTTTTATCAACAAGTTTTTAATAATATACTGTtaaaaactagcaaaaaaaaacttgatgATCTGCAGAAGCAATACCTTCAACATTTACTTGAGATTTCTGATGTTGAGATATTCAAATGTTCAAGTTGTGATTATCAAACTCTTAATAAAGCGAATCTTAACAGTCACTTGTGGGTAATTCACAAAAACGAATTAGAATTTGAAATTTTTCACTGTTTAAGTTGTTCATACAAATCTAAAAGTTTGGctgttttgaaaaaacatttgttaAGTCACATAGAAGAGAGTCCTAGCGATAATAATTTTAGTGATTTTGACAGATGTAATTCACCAGGTGTTGCAGAAAAACGTgataaactaaaaagaaaagCTTTAGTTGTAAAATTATGTGACTTATGTGATTAcaaaactgaaaataaaaatcatttcgAGACTCATAAAAAGACACATTTTGCAATAACAGATAGTGGCAAAACATTCATGTGTTATCTATGTAGCTACGAAAACCGAAGTAAAATAGGCATTCTAAATCATTTAGTAAAGGAGCATAGTATACAAACTCCAAAGATAGAaagcaaaactaaaaaatgtgCGTTTTGCGATTATACAACTCTATCAAAAGAACCTTTAAGAGTTCACATGTTATCGCACAAAAATCCGGACGAAATTGAATGGTTTCAATGTTCTCAATGCgattttaaaaccaaatttaaaGCGAATTTAAACTTGCATCAACAGCTTCACAATCCagaaaaaatcgaaaaaaaattccTTTGTGAAGTGTGTAGCAGAGCCTTTAGAAATAGAGGCAAGTTAAAAATGCATTTGTTGACACACAAAACCTTGGATGAAGTATCTGAAATATTTCAGTGTAACCAATGTTCTTACaagaccaaaaacaaatattgtttaaaacaacaCATGGAAGTTCATAACAAACTAGAAAGGTTcgtgtgtgacatttgtggGTTCCAAAGCAAACGTAAATGGAATTATGATGCGCATGTTTTGACTCACAGAGACGAAACTGAAGTCGAATTGCATAAGTGTGACATTTGCGGTTACAAAACCAAATTTAAAGACAGACTAACAAGACATATAAAAAAAGGTCACATGACAAGTCAGGGTAAATCCGTATCAAGGCCTACGAACTACAGTTGCAGCGCGTGTGATTTTAAGTCTATTTGTAAACGAAGTTATTTGGATCACATAACAACACATGAAAACCCAGAGGAAGTCGAGAAAAAACGTTTGGCTTGCGAGTTTTGTGAATTTCgcaccaaaaacaaaggcgcTCTCGCTCAGCACTCATTAAGCCACAAGCGCACAGACCAAGTAAAGACTTTCAAGTGCAGCCAACCGGGTTGCGAATTTCAAAGCAAGTTTAGAGGGAGTTTGAGTGCGCATTTAGAACGACACAAGGACCCAAGCGAAGCGACTCTTTTCAAATGCGGCATTTGCGGATTGCAGAGTCGTAGCAAATGGAATTACAACATGCATTTGATCACGCACAAGAGCTCTAATGAAGTCGAGGtttttacatgtaacatttgcaGTTACCAAACCAAGTTTAAAGCGTATTTAAAAGCGCACTTAAAAAAGAGACATGGTATTGTGACCACGAGGGTTAGAGTGAAAATTGAGACACCGTGA
- Protein Sequence
- MAKIGAHLTESQGKHIYDSLLSLDEKIEIEETGVHQEDHSVEIELKDIVKIDLECVKEDLSFIEKNIEIESTAPKSLNNQEFESHVEKNYSTNFIKDHTEDIKSLFKEDNLYFETQKFYQQVFNNILLKTSKKKLDDLQKQYLQHLLEISDVEIFKCSSCDYQTLNKANLNSHLWVIHKNELEFEIFHCLSCSYKSKSLAVLKKHLLSHIEESPSDNNFSDFDRCNSPGVAEKRDKLKRKALVVKLCDLCDYKTENKNHFETHKKTHFAITDSGKTFMCYLCSYENRSKIGILNHLVKEHSIQTPKIESKTKKCAFCDYTTLSKEPLRVHMLSHKNPDEIEWFQCSQCDFKTKFKANLNLHQQLHNPEKIEKKFLCEVCSRAFRNRGKLKMHLLTHKTLDEVSEIFQCNQCSYKTKNKYCLKQHMEVHNKLERFVCDICGFQSKRKWNYDAHVLTHRDETEVELHKCDICGYKTKFKDRLTRHIKKGHMTSQGKSVSRPTNYSCSACDFKSICKRSYLDHITTHENPEEVEKKRLACEFCEFRTKNKGALAQHSLSHKRTDQVKTFKCSQPGCEFQSKFRGSLSAHLERHKDPSEATLFKCGICGLQSRSKWNYNMHLITHKSSNEVEVFTCNICSYQTKFKAYLKAHLKKRHGIVTTRVRVKIETP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -