Aaen061568.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755045.1:72227248-72230100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8 2.3e+02 4.6 0.6 1 23 97 119 97 119 0.92 2 17 9.8e-06 0.0012 21.2 3.4 1 23 128 150 128 150 0.98 3 17 0.71 86 5.9 1.4 2 23 159 180 158 180 0.95 4 17 1.2 1.5e+02 5.2 4.7 1 23 246 268 246 268 0.98 5 17 0.00037 0.045 16.3 4.0 1 23 277 299 277 299 0.97 6 17 0.075 9.1 9.0 0.5 2 23 309 330 308 330 0.95 7 17 0.019 2.3 10.9 1.0 3 23 341 362 339 362 0.95 8 17 0.015 1.8 11.2 1.1 1 23 547 569 547 569 0.96 9 17 0.00062 0.076 15.5 6.6 1 23 578 600 578 600 0.98 10 17 1.4 1.8e+02 4.9 1.9 2 23 609 630 608 630 0.97 11 17 0.0039 0.48 13.0 2.7 1 23 639 662 639 662 0.98 12 17 0.0032 0.39 13.3 5.5 1 23 667 689 667 689 0.99 13 17 1.2 1.5e+02 5.2 0.7 1 23 698 722 698 722 0.96 14 17 0.043 5.3 9.7 3.9 1 23 731 754 731 754 0.97 15 17 0.021 2.6 10.7 1.5 1 23 763 785 763 785 0.96 16 17 0.0087 1.1 11.9 6.0 1 23 794 816 794 816 0.98 17 17 0.016 2 11.1 2.4 1 23 825 848 825 848 0.98
Sequence Information
- Coding Sequence
- ATGGACTCGTCCACTAGTTGGTTTCCACCTTGGGGAGCAGCGCCTACTTACTATTGGAACATCAAACGAGAGGAGCCATTAGAAGTGCTTGCAAGACCGCCTGAAGTACCACTTCACCCTTGCCTCCCTAGCAACCAAATAGCCTTGATTCCTGTGCCTCCTTGCAACATCAAAAATGAAATACCTTTAgaaaaaactttagaaaaaccAGTACATCTGCTTCAAGAAGCAGTTGTTAATGATCAAAAATTAGGTGAACAAAAGCCTATCAATCAAGAGCCAACTATATATCTGTGTGAAGTGTGCTCATTTCAAACAATATACAAAAAAAGTCTTAGAGACCATTCCATTTTGCACAAAGATTTGTCAGAAATTACTTTGTATCCTTGTGAGATTTGTGGGCACATATGTAAGAGAAAATCTGACTTAAAACAGCACATGTTAAAACATGGTGGTAATGAAAATACAATCCTAAGGTGTAGTTTTTGTCCCTTTCAAACAAATTAtagaaaaagtttaaaaatacaTGAGCTCAATCACAAAAGTAAGGATGAAATAGAGATATTTCACTGTGAATTTTGTTCCTTTCAAACTAAATATGAAGATTATTTGAGAAAACATTACAAACATCAACATGGCCAGATTTATTCTAAGCCAAAAAAACCAAGAGAGCCTGCTGTTAGAAAACCCCCTCCACCCAGAAAAAGTATTAAAGACCTTCCAGATCCAATCCTATATAAGTGTGAAAAATGTCATTTTCAAACTAAATGGAAATATAGTTTGAGAGATCACAAAATGATACACATGGATATGACAGAACTACAAACATTCCCATGTCCAAAATGTGTCCATGTTTGTAAAAGAAAATCCGATTTGAAGCAGCATATGGTGAAACACGCTTCAGGTGACAATGTAGTTTTGTTAAAATGTGCACTATGTCCCTATGagactaaatataaaaaaagccTAAAAATACATGAATTAAATCACAAGAATGATGATGAAGTTGAGATAATTGCATGTGATTTGTGTGAGTTTAGAACTAAATATAAAGATTCtttaagaaaacataaaaaaatcatgcATAGTGGGGATTCAaggaaaaaaagaaaaatgaaatataGAAAAGATATTTTGATGAAGAAACCCAAAAGAAGAGCAAGAACACAAAGTggtttgaatttaaaaaaatcagtaaaaataGAAGATTCTTTAGAAAATTCTAAAAGTACAGAAGAAGAAAAAAAGGTTGAACCCTTGAAAATTAAAGTAGAACCAGAGTTTAACTATATTATGCCAGTAGAATTTGAGCTAGAACCATTTTCTGATGATGATTACACATTTACAGTAAATGATTTTGATGAATTAAAGTCAGAGTCATCTGATTCTGATTGGTGccttgaaaaaattagaataagagaacaaacgaaaaataaaaaggaAGTACCAAAGGAGCCAGAAGTTGATCAGgttaaaaaagaagcaaaaGAAGAAATCAAACatgaaatacaaaaaaaggaAGAAAGCAATAAAGAAGCACAGAAGGAAAAAAAGAAGCACAAAAGAAAAATGACAGcaataaaagttaaaagaaaagtTGGAAGACCTAAGATAAGTCAAGAACCAGACCTTTCAGTATACAAGTGTAGTGTTTGTCCATTTGAAACAAAATATAAGAAGAGCCTTAAAGATCACTCCATCATTCACAAAGACATGTCAGAACTGGATCTCTTTCAGTGTTCTACTTGTGGCCATTTATGCAAGAGGAAATCTGATTTGAAACAACACATGTTAAAACACAACTCAATCCAGATCACCATGATGAAGTGTGAGTTATGCTCTTTTCAGTCAAAGTACAAAAAAAGCATGAAAATTCATGAGCTAACTCACAAGACAGATTATGAAACTGAAATATTCAAATGTGAATATTGTGATTTTCAATCAAAATACAAAGATTCCGTTAGAAAACACCAGAAAGTCATGCATGGGACTGATGTGTTTCAGTGTCCTTATTGTGAGTTTCACACCAAACATAAAAGTTACCTTAGTGAGCATCTTTTAACACATAAAGCTGCTGATGAGACTGAAGTGTTCTACTGTCCTGAAGAAAACTGTAAATATCAATCTGTTAGGAAACAAGACATTAAAAAACATTCCTTAATTCATAAAACTTTTGAAGAAATCACAGCATTCTACTGCCACATGTGCACTTTTAAAGCCAAAAGAAAAATGGAGTTGGAAAAACATTTACTAATGAAACATACCCCTGAAGATCAATTGCCAGATTATAACTGTGAAGTTTGTTCATTCACAACAAAAGTCAAAAGAAATTTGTTACGCCACAAAATCAATCACAAAGATGTGGCTCCTCAAGATTTATACATCTGTAGGACGTGCAACTATAGTACCAAGCACAAAGATACTTACAAACAGCACTTGAAAACTCACATGAGCATTGATGAAGTAAAGAACTACAAATGTCAATTATGCAAtgttaaaagtaaatataaaaacactGTAAAAAGGCACATGCTTAAGGTGCACAAAACTGAGTGGTTAGAACAAAGAAGGACAGAAAATTTTGGGTACAATTTTAATAATGATGTTCAAGAAACAAAGAAAAATGTGGCATTAGGTTATGGTGATAACTATATGAAGTTTTGTGAATATTTTAAAGAGCAAGGAGAGGGTTCTGGCACAAATTAG
- Protein Sequence
- MDSSTSWFPPWGAAPTYYWNIKREEPLEVLARPPEVPLHPCLPSNQIALIPVPPCNIKNEIPLEKTLEKPVHLLQEAVVNDQKLGEQKPINQEPTIYLCEVCSFQTIYKKSLRDHSILHKDLSEITLYPCEICGHICKRKSDLKQHMLKHGGNENTILRCSFCPFQTNYRKSLKIHELNHKSKDEIEIFHCEFCSFQTKYEDYLRKHYKHQHGQIYSKPKKPREPAVRKPPPPRKSIKDLPDPILYKCEKCHFQTKWKYSLRDHKMIHMDMTELQTFPCPKCVHVCKRKSDLKQHMVKHASGDNVVLLKCALCPYETKYKKSLKIHELNHKNDDEVEIIACDLCEFRTKYKDSLRKHKKIMHSGDSRKKRKMKYRKDILMKKPKRRARTQSGLNLKKSVKIEDSLENSKSTEEEKKVEPLKIKVEPEFNYIMPVEFELEPFSDDDYTFTVNDFDELKSESSDSDWCLEKIRIREQTKNKKEVPKEPEVDQVKKEAKEEIKHEIQKKEESNKEAQKEKKKHKRKMTAIKVKRKVGRPKISQEPDLSVYKCSVCPFETKYKKSLKDHSIIHKDMSELDLFQCSTCGHLCKRKSDLKQHMLKHNSIQITMMKCELCSFQSKYKKSMKIHELTHKTDYETEIFKCEYCDFQSKYKDSVRKHQKVMHGTDVFQCPYCEFHTKHKSYLSEHLLTHKAADETEVFYCPEENCKYQSVRKQDIKKHSLIHKTFEEITAFYCHMCTFKAKRKMELEKHLLMKHTPEDQLPDYNCEVCSFTTKVKRNLLRHKINHKDVAPQDLYICRTCNYSTKHKDTYKQHLKTHMSIDEVKNYKCQLCNVKSKYKNTVKRHMLKVHKTEWLEQRRTENFGYNFNNDVQETKKNVALGYGDNYMKFCEYFKEQGEGSGTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -