Aaen002660.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755038.1:22550966-22557608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0027 0.33 13.5 2.3 1 23 177 199 177 199 0.97 2 13 0.00035 0.042 16.3 3.4 1 23 208 230 208 230 0.98 3 13 0.02 2.5 10.8 3.9 1 23 239 261 239 261 0.98 4 13 0.012 1.5 11.5 7.2 1 23 270 292 270 292 0.98 5 13 0.013 1.5 11.4 6.9 1 23 301 323 301 323 0.98 6 13 0.0011 0.13 14.8 0.7 2 23 333 355 332 355 0.92 7 13 0.0007 0.085 15.4 1.6 1 21 364 384 364 385 0.95 8 13 0.2 24 7.6 6.1 1 23 395 417 395 417 0.97 9 13 0.012 1.5 11.5 7.2 1 23 426 448 426 448 0.98 10 13 0.0039 0.47 13.0 4.1 1 23 457 479 457 479 0.98 11 13 0.00043 0.053 16.0 0.5 2 23 489 511 488 511 0.94 12 13 0.9 1.1e+02 5.6 2.9 1 23 520 542 520 542 0.96 13 13 0.011 1.3 11.6 6.1 1 23 551 573 551 573 0.98
Sequence Information
- Coding Sequence
- ATGGAAGCATTAGAATTATCTGGTATTACACCTGTTCTAGAACAATCTAAGAACCAATACCTTTCCACAGAGTTACTAGAAAGAAATGAGGGACAACTAATTGTCAGGCCTGAAAATATCTTCAGCAAAATAGATTATATGGCATCAGGATGCAGTACATTCAAAGGAGTGGTCACAGAAAGCaattctaataaaattaaaattgacaGTGTTAGTTTTAGCATGTTGGAAAGTCATTTACCAGACCTTTCACAATCCAGCATAAAATTGGAACCTGAAGACTTTGATTATAAAACTGAGGAGGTAAAGAAGAAGTTGATGTTGGATGACAGTTTATCTGATATGTTGGACACTAATTTTCCTGGCCCTTCATCATCCTGTATAAAATGGGAACCTGAAGACTTTGAGCTAAAGACTAAAGATATTAAGCAGGAGGAGTTGATCTTGAATGACAGCTTATCTGAaCCGGATATTCCACTTATTCCAGATAATCAAATAAAGAAAAGAAAGAAAGAAGAAATCAATTGGTTTGAATGCAACCAGTGTAATTATAAGGCCAAAAGGAAGTTCCAATTGAACAGTCATTTGCTGCAACACAAAAGTGcagatgaaatcaattggtttaaatgcgaccagtgtgactacaaggccaaacaTAATTCTAGTTTGcaaagacatttgctgcaacacAAAAGTGAAGATGAAAACAACTGGTTTAAATGTGACCAGTGTAATTTCAAGGTCAACCACGAGCGTTATTTGAATAGGCATTTGCTGCAGCACAAACCTGcagatgaaatcaattggtttaaatgcgaccagtgtgattacaaggccaaacatAAGTTCCACTTGAAATCACATTTATTGAAGCACAAAAGTGcagatgaaatcaattggttcAAATGCGAGcaatgtgattacaaggccaagcaTAAGTTCCATTTGAAATCACATGTGATGAAGCACAAAAGTGCAAAGAAAATCAATTGGTCTgaatgcaaccagtgtgactacaaggccatACGCAAGTCCGATTTGAAGAGACATATTTTCTGGAAGCACAAAAGAGcagatgaaatcaattggtttaaatgcgaccagtgtgactacaaggccaaacaTAATTCTAGTTTGcaaagacatttgctgcaacGCAAAAGTGAAGATGAAAACAACTGGTTTAAATGTGACCAGTGTAATTTCAAGGTCAACCACGAGCGTTGTTTGAATAGGCATTTGCTGCAGCACAAACCTGcagatgaaatcaattggtttaaatgcgaccagtgtgattacaaggccaaacatAAGTTCCACTTGAAATCACATTTATTGAAGCACAAAAGTGcagatgaaatcaattggttcAAATGCGAGcaatgtgattacaaggccaagcaTAAGTTCGATTTGAAATCACATGTGATGAAGCACAAAAGTGCAAAGAAACTCAATTGGTCTgaatgcaaccagtgtgactacaaggccatACGCAAGTCCGATTTGAAGAGACATATTTTGTGGAAGCACAAAAGTGcagatgaaatcaattggtttaatTGTGAgcagtgtgattacaaggccaaagAGAAATGTAGATTAAAGGTACATCTTCTGCAGCACAAAAGTGCagatgaaattaattggtttaaatgtgagcgatgtgattacaaggccaaacgAAAGTCTCATTTACGGGGACACTTGCAACATCACAAAAGCAGATTACAAAGGCAAACAGACGTTCAATTTGAAcatacaaaagtttaa
- Protein Sequence
- MEALELSGITPVLEQSKNQYLSTELLERNEGQLIVRPENIFSKIDYMASGCSTFKGVVTESNSNKIKIDSVSFSMLESHLPDLSQSSIKLEPEDFDYKTEEVKKKLMLDDSLSDMLDTNFPGPSSSCIKWEPEDFELKTKDIKQEELILNDSLSEPDIPLIPDNQIKKRKKEEINWFECNQCNYKAKRKFQLNSHLLQHKSADEINWFKCDQCDYKAKHNSSLQRHLLQHKSEDENNWFKCDQCNFKVNHERYLNRHLLQHKPADEINWFKCDQCDYKAKHKFHLKSHLLKHKSADEINWFKCEQCDYKAKHKFHLKSHVMKHKSAKKINWSECNQCDYKAIRKSDLKRHIFWKHKRADEINWFKCDQCDYKAKHNSSLQRHLLQRKSEDENNWFKCDQCNFKVNHERCLNRHLLQHKPADEINWFKCDQCDYKAKHKFHLKSHLLKHKSADEINWFKCEQCDYKAKHKFDLKSHVMKHKSAKKLNWSECNQCDYKAIRKSDLKRHILWKHKSADEINWFNCEQCDYKAKEKCRLKVHLLQHKSADEINWFKCERCDYKAKRKSHLRGHLQHHKSRLQRQTDVQFEHTKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -