Aaen062605.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755046.1:4134984-4136045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2 3.9e+02 3.8 0.8 13 23 2 12 1 12 0.91 2 12 1.1 1.3e+02 5.4 6.2 1 20 21 40 21 43 0.94 3 12 0.00031 0.038 16.5 2.1 1 23 52 74 52 74 0.98 4 12 0.016 2 11.1 6.8 1 23 83 105 83 105 0.97 5 12 0.083 10 8.8 8.2 1 20 114 133 114 136 0.95 6 12 0.013 1.6 11.4 2.2 1 23 145 167 145 167 0.98 7 12 5.3e-05 0.0065 18.9 5.9 1 23 176 198 176 198 0.98 8 12 0.32 39 7.0 5.9 1 20 207 226 207 231 0.95 9 12 9.4e-05 0.011 18.1 3.9 1 23 238 260 238 260 0.98 10 12 7.3e-05 0.0089 18.5 0.5 1 23 269 291 269 291 0.99 11 12 3.5e-05 0.0042 19.5 2.9 1 23 300 322 300 322 0.98 12 12 2.9e-05 0.0036 19.7 5.4 1 23 331 353 331 353 0.98
Sequence Information
- Coding Sequence
- ATGAGATATAACCTGGAAAGACATCAGTTGAAACATAAAAGTACAAAcgaaattaattggtttagaTGCCACCAATGTAACTACAAGGCCAAGCTAAAGTCGCAAATTAAAAGACATTTGCTTTGCCATAAAAGTGCAaacgaaatcgattggtttgaatgcaaccagtgtgattacaaagcCTATAAGAGATATAACCTGGAAAGACATCAGTTGAAACATAAAAGTACAAAcgaaattaattggtttaaatgcaaccactgtAACTACAAGGCCAATAGAAAGTTCAGTTTAAAGACTCACCAGTTTCAACATAAAAGTGAGAAcgaaattaattggtttagaTGCCACCAATGTGACCACAAGACCAAGCTGAAGTCGGATCTTAAAAAACATTTGCTTTGTCATAAAAGTGCAaacgaaatcgattggtttaaatgcaaccagtgtgactacaaAGCCAAATGGAAGTCCAGTTTAAAAACACATCAGTTACAACACAAAAATGCAAATGAAGTCATTTTGTTTGAATGCAGTCACTGTGACTACAAGACCAAGAGAAAGACTAATTTAAAGAATCACCAGTTAAAACATATAAGTGAAAAcgaaattaattggtttagaTGCCACCTGTGTGACCACAAGGCCAAGCTGAAGTCGGATCTTAAAACACATTTGATTTGTCACAAAAGCGCAAgcgaaatcgattggtttaaatgcgatCACTGCGACTACAAAGCCAAACGGAAGGccaatttaaaaacacatcagTTACAACACAAAAATGCAAATGAAGTAGATTGGTTTCAATGCAACCTATGCGGCTACAAGGCCATTTTAAAGTCCAATTTAAAGATTCACCAATTGACACATAAAAGTGGAAAcgaaattaattggtttaaatgcaaccagtgtgattacaaggccaatAGGAAATATAACCTGGAGAAACATCAGTTGAAACATAAAAGTCAaaatgaaatcaattggtttacATGCAACCACTGTGAGTACAGGACCAAACGAAAATCGAATCTGAAAATTCATCAATTGCGACATTAA
- Protein Sequence
- MRYNLERHQLKHKSTNEINWFRCHQCNYKAKLKSQIKRHLLCHKSANEIDWFECNQCDYKAYKRYNLERHQLKHKSTNEINWFKCNHCNYKANRKFSLKTHQFQHKSENEINWFRCHQCDHKTKLKSDLKKHLLCHKSANEIDWFKCNQCDYKAKWKSSLKTHQLQHKNANEVILFECSHCDYKTKRKTNLKNHQLKHISENEINWFRCHLCDHKAKLKSDLKTHLICHKSASEIDWFKCDHCDYKAKRKANLKTHQLQHKNANEVDWFQCNLCGYKAILKSNLKIHQLTHKSGNEINWFKCNQCDYKANRKYNLEKHQLKHKSQNEINWFTCNHCEYRTKRKSNLKIHQLRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -