Aaen002582.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755038.1:21655792-21701480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.02 2.5 10.8 2.1 1 23 154 176 154 176 0.97 2 18 9.7 1.2e+03 2.3 1.4 1 17 185 201 185 202 0.84 3 18 0.02 2.4 10.8 2.5 1 23 376 398 376 398 0.97 4 18 0.99 1.2e+02 5.5 6.1 1 23 407 429 407 429 0.97 5 18 0.0027 0.33 13.5 2.4 1 23 438 460 438 460 0.97 6 18 0.0028 0.34 13.5 1.3 1 23 469 491 469 491 0.97 7 18 0.0047 0.57 12.8 1.7 2 23 501 522 500 522 0.96 8 18 0.54 66 6.3 2.7 1 23 673 695 673 695 0.97 9 18 0.0018 0.22 14.1 2.6 1 23 704 726 704 726 0.97 10 18 0.00084 0.1 15.1 1.5 1 23 735 757 735 757 0.97 11 18 0.31 38 7.1 8.3 1 23 766 788 766 788 0.97 12 18 0.0014 0.17 14.4 2.8 1 23 797 819 797 819 0.98 13 18 0.0026 0.32 13.6 2.5 1 23 828 850 828 850 0.97 14 18 0.00037 0.045 16.2 1.9 1 23 859 881 859 881 0.97 15 18 0.31 38 7.1 8.3 1 23 890 912 890 912 0.97 16 18 0.0026 0.32 13.6 2.5 1 23 921 943 921 943 0.97 17 18 0.003 0.37 13.4 3.8 1 23 952 974 952 974 0.97 18 18 0.55 67 6.3 0.3 2 23 984 1005 983 1005 0.96
Sequence Information
- Coding Sequence
- ATGGCATCAGAACTGGTATTTTCAAGTTTAGGTAAAATTAGAAAAGAAATATCGGCAGATAAGGTTGGATGTTGCAGTACATTGAAAGAAGGGGTGGCAGCTGAAAGCaattctaataaaattaaaattgaaaatgaaTTGTTTGAATACAGTGGTAGTTTCAGCAAGTTCAAAAGTCATTTCCCTGGCCCTTCATCAGCCAGCATAAAATGGGAACCTGAAGAGTTTAAGCTAAAGACTGCGGAGATAAAGCAGGAGGAGTTGATGTTGAATGACAGATCATCTCACATGTTGGACACACAATTTTCTGGTCCTTCATCAGCCAACATAAAATGGGAACCTGAAGACTTTGATCTAAAGAGTGAGGAGATGAAGCAGGAGTTGATATTGGACAGCTTATTTGAacCAGCTATTCAAACTGATCAAAGAAAGGAAAGAAAGAAGGAagaaatcaattggtttaaatgcgaccagtgtgattacaaggccaaaaaGAAGTTCCTATTAAACAGTCATTTGCTGCAACACAAAAGTGCTGATGAAATTCATTGGTTCAGATGCGaccaatgtgattacaaggcGAAACATAGTTTTAGTATGAAGAAAGAAAATGATGGACAACTAATTGTCAGGACTCAAAACATCTTCAACAAAAAAGATTCTATGGCATCAGAACTTTTATTTTCAAGTttagataaatttaaaaaagaaaaattcgCAGATAAGGTTGGACCAGGTTGCAGCACATTGAAAGAAGGGATGGCAGCTGAAAACAATTctatgaaaataaaaattgaaaatgaatTGCTTGAATACAGTGCTAGTTTTAGCAAGTTCGAAAGTCATTTCCCTGGCCCTTCATCAGCCAGCATAAACTGGGAATCTGAACACTTTGAGCTAAAGACTGCGGAGATAAAGCAGGAGTTGATGTTGGATGATGTCTCATCTGACATGTTGGACACACATTTTTCTGGCCCCTCATCAGCCAACATAAAATGGGAACCTGAAGACTGTGAGCTAAAGACTGACGAGATAAAGCAGGAGTTGATGTTGGATGACAGCTTATTTGAaccGGCTATTCAAAATGATCAAAGAAAGGAAAGAAAGAAGGAagaaatcaattggtttaaatgcgaccagtgtgattacaaggccaaaaaGAAGTTCCTATTAAAGAGTCATTTGCTGCAACACAAAAGTGCTGATGAAATTCGTTGGTTCAAATGCGaccaatgtgattacaaggcGAAACATAGTTTTAGTATGAAGGTACATAGGCTGCATCACAAAAGTACACATGAAATCTcttggtttaaatgcgaccagtgtgattacaaggccaaaagGAAGTTCCAATTAAACAGtcatttgctgcaacataaaagTGCAGATGAAATTAAATGGTTTAAATGCGTccaatgtgattacaaggccaaacggAAGTCCAATCTGGACAGTCATTTGCTGCAACACAAAAGTCAAGATGAAATCAATTGGCTTAAATGTGACCAATGTGATTACAAAGCCAAAGAGAAGTCTAACCTAAATGTACATTTGATGCACCACAAAAGTGCAGATGAAATTAataaatttaaaaaagaaaaatctgcAGATAAGGTTGGACCAGGTTGCAGTACATTGAAAGAAGGGGTGGCAGCTGAAAACAATTctattaaaattgaaattgaattgcTTGAAAACAGTGCTAGTTTTAACACGTTCGAAAGTCATATCCCTGGCTCTTCATCAGCCAGCATAAAATGGGAACTCGAGGACTTTGATTTAAAGACTGAGGAGATAAAGCAGGAGGAGTTGATGTTGGATGACGTTTCATCTGACACATTTGAAAGTCATTTCCCTGGCCCTTCATCAGCCAGCATAAAATGGGAACTTGAAGACTTTGATTTAAAGACTGAGGAGATAAAGCAGGAGGAGTTGATGTTGGATGACGTCTCATCTGAATCGGATATTCAAAATGACCAAGGAAAGGAAAGAAAGAAGGAAGAAATCAATTCgtttaaatgcgaccagtgtAATTTCAAGGCCAAACAGGAGTGTGATTTAAAGGGACATTTGCTGCAACACAAAAGTCCagatgaaattaattggttCAAATGCACccaatgtgattacaaggccacAAGGAAGTTCCAATTAAACAATCATTTGTTGCAACACAAAAGTGcagatgaaatcaattggttcAAATGCGaccaatgtgattacaaggccaaacggAAGTCCAATCTGGACAGTCATTTGCTGCAACACAAAAGTGCTGATCAAATTCGTTGGTTCAAATGCCaccaatgtgattacaaggcGAAACATAGTTTTAGTTTGCAGGTACATAGGCTGCATCACAAAAGAACAGATGAAATTcgttggtttaaatgcgaccaatgtgattacaaggcGAAACATGCTTATAGTTTGCAGagacatttgctgcaacacAAAAGTACAGAGGAAATctattggtttaaatgcgaccagtgtgattacaaggccaaaagGAAGTTCCAATTGAACACTCATTTGCTGCAACACAAAAGTGcagatgaaatcaattggtttaagtgcgatcagtgtgattacaagaccaCAAGGAAGGTCCAATTGAACAGTCATTTGCTGCAACACAAAAGTGCTGATGAAATTCgttggtttaaatgccaccaatgtgattacaaggcGAAACATAGTTTTAGTTTGCAGGTACATAGGCTGCATCACAAAAGAACAGATGAAATctattggtttaaatgcgaccagtgtgattacaaggccaaaagGAAGTTCCAATTGAACACTCATTTGCTGCAACACAAAAGTGcagatgaaatcaattggtttaaatgcgatCAGTGTGAATACAGGACCAAAAGGAAGTTCCAATTGAAAACTCATTTGCTGCAACACAAAAGTTCAGATGAAATTAATTGGATCAAATGCGaccaatgtgattacaaggccaaatGGAAGTCCAATCTGGACAGTCATTTGCTGCTTCACAAAAGTCAAGATGAAATCAATAAGGCGCTAACTatgacgtag
- Protein Sequence
- MASELVFSSLGKIRKEISADKVGCCSTLKEGVAAESNSNKIKIENELFEYSGSFSKFKSHFPGPSSASIKWEPEEFKLKTAEIKQEELMLNDRSSHMLDTQFSGPSSANIKWEPEDFDLKSEEMKQELILDSLFEPAIQTDQRKERKKEEINWFKCDQCDYKAKKKFLLNSHLLQHKSADEIHWFRCDQCDYKAKHSFSMKKENDGQLIVRTQNIFNKKDSMASELLFSSLDKFKKEKFADKVGPGCSTLKEGMAAENNSMKIKIENELLEYSASFSKFESHFPGPSSASINWESEHFELKTAEIKQELMLDDVSSDMLDTHFSGPSSANIKWEPEDCELKTDEIKQELMLDDSLFEPAIQNDQRKERKKEEINWFKCDQCDYKAKKKFLLKSHLLQHKSADEIRWFKCDQCDYKAKHSFSMKVHRLHHKSTHEISWFKCDQCDYKAKRKFQLNSHLLQHKSADEIKWFKCVQCDYKAKRKSNLDSHLLQHKSQDEINWLKCDQCDYKAKEKSNLNVHLMHHKSADEINKFKKEKSADKVGPGCSTLKEGVAAENNSIKIEIELLENSASFNTFESHIPGSSSASIKWELEDFDLKTEEIKQEELMLDDVSSDTFESHFPGPSSASIKWELEDFDLKTEEIKQEELMLDDVSSESDIQNDQGKERKKEEINSFKCDQCNFKAKQECDLKGHLLQHKSPDEINWFKCTQCDYKATRKFQLNNHLLQHKSADEINWFKCDQCDYKAKRKSNLDSHLLQHKSADQIRWFKCHQCDYKAKHSFSLQVHRLHHKRTDEIRWFKCDQCDYKAKHAYSLQRHLLQHKSTEEIYWFKCDQCDYKAKRKFQLNTHLLQHKSADEINWFKCDQCDYKTTRKVQLNSHLLQHKSADEIRWFKCHQCDYKAKHSFSLQVHRLHHKRTDEIYWFKCDQCDYKAKRKFQLNTHLLQHKSADEINWFKCDQCEYRTKRKFQLKTHLLQHKSSDEINWIKCDQCDYKAKWKSNLDSHLLLHKSQDEINKALTMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -