Aaen046137.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755043.1:11141256-11146287[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.56 68 6.2 6.2 1 23 11 33 11 33 0.94 2 18 0.0046 0.57 12.8 0.8 1 23 66 89 66 89 0.93 3 18 0.021 2.5 10.7 1.4 1 23 94 117 94 117 0.91 4 18 1.1 1.4e+02 5.3 0.5 2 21 129 148 129 149 0.94 5 18 0.012 1.5 11.5 3.0 5 23 165 183 161 183 0.93 6 18 7.3e-06 0.00089 21.6 1.7 1 23 189 211 189 211 0.98 7 18 0.29 36 7.1 2.4 5 23 261 279 257 279 0.93 8 18 7.3e-06 0.00089 21.6 1.7 1 23 285 307 285 307 0.98 9 18 0.014 1.7 11.3 1.6 1 23 313 338 313 338 0.93 10 18 0.96 1.2e+02 5.5 0.7 1 21 359 379 359 381 0.93 11 18 0.37 45 6.8 2.7 1 23 385 407 385 407 0.95 12 18 0.55 68 6.3 1.4 3 23 415 436 413 436 0.93 13 18 0.0011 0.13 14.8 1.6 1 23 439 461 439 461 0.98 14 18 0.51 63 6.4 1.0 1 23 467 490 467 491 0.92 15 18 0.001 0.13 14.8 0.3 1 23 533 555 533 555 0.95 16 18 3.9e-06 0.00048 22.5 0.5 1 23 561 583 561 583 0.98 17 18 0.0026 0.32 13.6 0.7 1 23 589 611 589 611 0.98 18 18 0.01 1.3 11.7 0.5 1 20 617 636 617 638 0.94
Sequence Information
- Coding Sequence
- ATGCATCAAGAATTGCACattgcaaaaaattttatttgcgAAATTTGTGAATGTAACTTTAAACATGCACATACTTATTGTTGGCATGCAATTGAACATCAAACAGACCAGAGTCTTTTTAAATGTCCGTTGTGTTCATACTCAAATGATTGCATCAAGAAGTTTAAAGCACATTGTATCAACAGACATTCACAGTTTCGCTGTTATGGTTGTAACAAAGGATTTTCTGACGGGGCTGGCTTATCTAAACATAAAACTAACTATCATAGGGTAGCAAATTTTAGCTGCATTGTTTGCCTTAAGGAATTTAGTACTGCATCATACCTAACGGAACATCAAATCCATAAGCACCAAGTTAGTAATACGGGCAAATTAATAGGAGCTAGGTGTGATTTATGCTACCAGTACTTTGGAAAActtgaatattttgaaaaacatcaACTTAAATGTACTGGAGTTAAACCGAAAAAAGAAAAGAATCATTTATGTATTACTTGTGGTcatagttttaaagaaaattacaaaCTTCAAATTCACATATTGACGCATACTGGAGACAGACCATTCGAGTGTAAGGTTTGTGGAAAAAGATTTAACAGAAAAGACAGGCTGACTATGCACTCTAGAATTCATTCGGGTGAGCAACCATATAACTGCGAATTTTGCGGAGCTAGGTGTGATTTATACTACCAGTACTTTCGAAAGcttgaatattttgaaaaacatcaACTTAAATGTACTGGAGTTAAACCGAAAAAGGAAAAGAATCATTTATGTATTACTTGTGGTCatagtttaaaagaaaattacaaaCTTCAAATTCACATATTGACGCATACTGGAGACAGACCATTCGAGTGTAAGGTTTGTGGAAAAAGATTTAACAGAAAAGACAGGCTGACTATGCACTCTAGAATTCATTCGGGTGAGCAACCATATAACTGCGAATTTTGCGATTGTCCTCAAACTTTTAAGTCTGAAACATCTTTAGTTATTCATAAACAAGAAAGCCATTCAACAGTTAAACATGAGTACCACGATCCATCATATTCATTTGATGCAGTAAATAATCTTTACAAATGTGACCTTTGTTTCGAAGAGTATCCTAATCAACCAGATGCAGCTAGCCATATTAAGTGCCATCTAAACCTTTTTACTTGTCATTCTTGTGATACTACGCTCGATAATCCAGTGGACTTTTGTTTGCATTCAATGGAACACAAAATTGGTGACAAGATATTTTGCCCTCTTTGTTCGCACACCACTACAGTTCCAAATCAGTTTCGATCGCATGCCACAAGAAACCATTCGCCTTTCAAGTGTAAAAAATGCGGCAAAGGATTTTTAGAGAAGCCTTCACTTGAcagacatttaaaaaaacacgaTAACCAAACACATTTTAGTTGTATCGTATGTGATAAAGATCTACCTAGTGAAAAGCGATTACTAAAACATCAAAGAAATGTTCATCATGTTAATATAGATGCTTTAAAAAGTGGAAGATGCTTTTGCGGTCAATATTTTTCGAAAgataaatacaaatatttagCTCCTCACATGGCTCGGTGCACTGGTGAAAAAAGACCACGAAGGACCTTTTTATGTAGCATTTGTGGTTCTAAATTTGCTCAAGAAACCAAACTAAATGATCACTTACGAGCTCATACTGGCGAGCGACCATTTACCTGTACTGTATGTGGGAAAGGTTTTGGCAGGAAAGACAAACTTCTTCGACATGGTCGAATACATACAGGCGAAAAACCTTACAGATGTGGCTTCTGTGGAAAAGATTTTGCTTTGCTTAATTCGTTTAAAGTTCACGTTTATACGCACACTGGCGAAAAGCCCTTTGTTTGTCCAATATGTTCCAGGGGCTATTATACTAAACAAGGACTAAAATTACACAAGGAACATTGTAATGtcttattttaa
- Protein Sequence
- MHQELHIAKNFICEICECNFKHAHTYCWHAIEHQTDQSLFKCPLCSYSNDCIKKFKAHCINRHSQFRCYGCNKGFSDGAGLSKHKTNYHRVANFSCIVCLKEFSTASYLTEHQIHKHQVSNTGKLIGARCDLCYQYFGKLEYFEKHQLKCTGVKPKKEKNHLCITCGHSFKENYKLQIHILTHTGDRPFECKVCGKRFNRKDRLTMHSRIHSGEQPYNCEFCGARCDLYYQYFRKLEYFEKHQLKCTGVKPKKEKNHLCITCGHSLKENYKLQIHILTHTGDRPFECKVCGKRFNRKDRLTMHSRIHSGEQPYNCEFCDCPQTFKSETSLVIHKQESHSTVKHEYHDPSYSFDAVNNLYKCDLCFEEYPNQPDAASHIKCHLNLFTCHSCDTTLDNPVDFCLHSMEHKIGDKIFCPLCSHTTTVPNQFRSHATRNHSPFKCKKCGKGFLEKPSLDRHLKKHDNQTHFSCIVCDKDLPSEKRLLKHQRNVHHVNIDALKSGRCFCGQYFSKDKYKYLAPHMARCTGEKRPRRTFLCSICGSKFAQETKLNDHLRAHTGERPFTCTVCGKGFGRKDKLLRHGRIHTGEKPYRCGFCGKDFALLNSFKVHVYTHTGEKPFVCPICSRGYYTKQGLKLHKEHCNVLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -