Aaen072992.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755048.1:51883277-51888248[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.051 6.3 9.5 0.2 1 23 13 35 13 35 0.97 2 30 0.098 12 8.6 1.7 1 19 40 58 40 61 0.94 3 30 4 4.9e+02 3.5 4.2 1 23 71 93 71 93 0.94 4 30 0.023 2.8 10.6 2.7 1 23 101 123 101 123 0.94 5 30 0.036 4.5 10.0 0.6 1 23 132 155 132 155 0.91 6 30 0.0079 0.96 12.1 3.8 1 23 164 186 164 186 0.98 7 30 0.24 30 7.4 0.9 5 23 199 218 193 218 0.88 8 30 0.12 14 8.4 1.3 1 21 227 247 227 251 0.90 9 30 0.0031 0.38 13.3 1.4 1 23 264 286 264 286 0.97 10 30 0.1 12 8.6 4.3 1 23 291 313 291 313 0.96 11 30 4 4.9e+02 3.5 4.2 1 23 322 344 322 344 0.94 12 30 0.029 3.5 10.3 2.3 1 23 352 374 352 374 0.94 13 30 0.036 4.5 10.0 0.6 1 23 383 406 383 406 0.91 14 30 0.0033 0.4 13.3 4.3 1 23 415 437 415 437 0.98 15 30 0.0012 0.15 14.6 2.3 1 23 446 469 446 469 0.98 16 30 0.25 31 7.3 2.1 1 21 478 498 478 502 0.90 17 30 0.0023 0.29 13.7 1.9 1 23 515 537 515 537 0.97 18 30 0.62 76 6.1 1.6 2 23 543 564 542 564 0.95 19 30 4 4.9e+02 3.5 4.2 1 23 573 595 573 595 0.94 20 30 0.023 2.8 10.6 2.7 1 23 603 625 603 625 0.94 21 30 0.036 4.5 10.0 0.6 1 23 634 657 634 657 0.91 22 30 0.011 1.4 11.6 4.3 1 23 666 688 666 688 0.98 23 30 0.0012 0.15 14.6 2.3 1 23 697 720 697 720 0.98 24 30 0.049 6 9.6 1.3 1 22 729 750 729 753 0.90 25 30 0.02 2.4 10.8 0.9 1 23 766 788 766 788 0.97 26 30 0.1 12 8.6 4.3 1 23 793 815 793 815 0.96 27 30 1.2 1.4e+02 5.2 4.3 1 23 824 846 824 846 0.94 28 30 0.036 4.5 10.0 0.6 1 23 885 908 885 908 0.91 29 30 0.0033 0.4 13.3 4.3 1 23 917 939 917 939 0.98 30 30 0.0012 0.15 14.6 2.3 1 23 948 971 948 971 0.98
Sequence Information
- Coding Sequence
- ATGTTCATACACAAAGACATACGTGAAATTGAGTGGTTTTATTGCGCTCTTTGCGATTACAAAGCTGGCGTTAAAAATGATTTACAAAAACATATGGTTATGCATAGAGATAAAATGTTTCAATGTAACAAGTGCAGTTTTCGGACTAGACACAGAAACGCTTTAAGAAGTCATGAGACAATCGACAAAGACGAAAACGAAATTAGATGGTTTTATTGTGGCCATTGCGAGTACAAAGCTAAACAGAAACATTCTATAAAAGCTCACTCCGTTAGACACAAAGACATACGCGTGGAATTGTTTCAATGCACCGAGTGTACATTTAAAACCAAATATAGGAGTTACTTAAAAACCCATGTAGTACTTCATAAAAACGTGGAAGATATTGAGTGGTTTCCATGTGCAGATTGTAATTACAAAGCCAAAACTAAAGGTGCCTTAAAAACGCATAAATACCTAAACCATAACAACTTAGATGAAATTAGGTGGTTTTATTGTGCTCATTGCGATTATAAATCTAAAATGAAAACAAGTTTACAAAACCACTTGCTTACACATAAAGATAAAGGTCAAGTGGAGTGTTTTCAAAGTAAAAAGTGTCCTTATATGACAAAATACAAGGAAACGTTTAAACAACATGTCAGAATAATTCATGGCAACCCTAAAAAAATCACATGGTTTTCGTGCGGGGACTGCACTTTTAAGACCAAATACAAAGGTTATTTAATACGACATGCCGAAATTTCAAGACACATGATCATACACAAAGACATACGTGAAATTGAGTGGTTTTATTGCGCTCATTGCGATTACAAAGCTAGCGTTAAAAATGATTTACAAAAACATATGGTTATGCATAGAGATAAAATGTTTCAATGTAACAAGTGCAGTTTTCGGACTAGACACAGAAACGCTTTAAAAAGTCATGAGACAATCCACAAAGACGAAAACGAAATTAGATGGTTTTATTGTGGCCATTGCGAGTACAAAGCTAAACAGAAACATTCTATAAAAGCTCACTCCGTTAGACACAAAGACATACGCGTGGAATTGTTTCAATGCACCGAGTGTACATTTAATACCAAATATAGAAGTTACTTAAAAACTCATGTAGTACTTCATAAAAACGTGAAAGATATTGAGTGGTTTCCATGTGCAGATTGTAATTACAAAGCCAAAACCAAAGGTGCCTTAAAAACGCATAAATACCTAAACCATAGCAACGTAGATGAAATTAGGTGGTTTCGTTGTGCTCATTGCGATTATAAATCTAAAATGAAAACAAGTTTACAAAAGCACTTGCTTACACATAAAGATAAAGGTCAAGTGGAGTGTTTTCAATGTAAAAAGTGTCCATATATGACAAAATACAAGGAAACGTTTAAACAACATGTCAGAATAATTCATGGCAAccctaaaaaaattacatgGTTTTCGTGCAGGGACTGCACTTTTAAGACCAAATACAAAGGTTATTTAATAAGACATGCCGAAATTTCAAGACACATGATCATACACAAAGACATACGTGAAATTGAGTGGTTTTATTGCGTTCATTGCGATTACAAAGCTAgcgttaaaaataatttaaaaaaacatatggTTATCCATAGAGATAAAATGTTGCAATGTAACGAGTGCAGTTTTCAGATTAGACACAGAAACGCTTTAAAAAGTCATGAGACAATCCACAAAGACGAAAACGAAATTAGATGGTTTTATTGTGGCCATTGCGAGTACAAAGCTAAACAGAAACATTCTATAAAAGCTCACTCCGTTAGACACAAAGACATACGCGTGGAATTGTTTCAATGCACCGAGTGTACATTTAAAACCAAATATAGGAGTTACTTAAAAACCCATGTAGTACTTCATAAAAACGTGGAAGATATTGAGTGGTTTCCATGTGCAGATTGTAATTACAAAGCCAAAACCAAAGGTGCCTTAAAAACACATAAATACCTAAACCATAGCAACTTAGATGAAATTAGGTGGTTTCGTTGTGCTCATTGCGAATATAAATCTAAAATGAAAACAAGTTTACAAAAGCACTTGCTTACACATAAAGATAAAGGTCAAGTGGAGTGCTTTCAATGTAAAAAGTGTCCTTATATGACAAAATACAAGGAAACGTTTAAACAACATGTCAGAATAATTCATGGCAACCCTAAAAAAGTCACATGGTTTTCGTGCGGGGACTGCACTTTTAAGACCAAATACAAAGGTTATTTAATAAGACATGCCAAAATTTCAAGACACATGTTCATACACAAAGACATACGTGAAATTGAGTGGTTTTATTGCGCTCATTGCGATTACAAAGCTGGCGTTAAAAATGATTTACAAAAGCATATGGTTATGCATAGAGATAAAATGTTTCAATGTAACAAGTGCAGTTTTCGGACTAGACACAGAAACGCTTTAAAAAGTCATGAGACAATCCACAAAGACGAAAACGAAATTAGATGGTTTTATTGTGGCCATTGCGACTACAAAGCTAAACAGAAACATTCTATAAAAGCTCACTCCGTTAGACACAAAGACATACGCGTGGAATTGTTTCAATGCACCGAGTATACATTTAAAACCAAATATAGGAGTTACTTAAAAACTCATGTAGTACTTCATAAAAACGTGGAAGATATTGAGTGGTTTCCATGTGCAGATTGTAATTACAAAGCCAAAACTAAAGGTGCCTTAAAAACGCATAAATACCTAAACCATAGCAACTTAGATGAAATTAGGTGGTTTCGTTGTGCTCATTGCGATTATAAATCTAAAATGAAAACAAGTTTACAAAAGCACTTGCTTACACATAAAGATAAAGGTCAAGTGGAGTGCTTTCAATGTAAAAAGTGTCCTTATATGACAAAATACAAGGAAACGTTTAAACAACATGTCAGAATAATTCATGGCAACCCTAAAAAATCACATGGTTTTCGTGCGGGGACTGCACTTTTAAGACCAAATACAAAGGTTATTTAA
- Protein Sequence
- MFIHKDIREIEWFYCALCDYKAGVKNDLQKHMVMHRDKMFQCNKCSFRTRHRNALRSHETIDKDENEIRWFYCGHCEYKAKQKHSIKAHSVRHKDIRVELFQCTECTFKTKYRSYLKTHVVLHKNVEDIEWFPCADCNYKAKTKGALKTHKYLNHNNLDEIRWFYCAHCDYKSKMKTSLQNHLLTHKDKGQVECFQSKKCPYMTKYKETFKQHVRIIHGNPKKITWFSCGDCTFKTKYKGYLIRHAEISRHMIIHKDIREIEWFYCAHCDYKASVKNDLQKHMVMHRDKMFQCNKCSFRTRHRNALKSHETIHKDENEIRWFYCGHCEYKAKQKHSIKAHSVRHKDIRVELFQCTECTFNTKYRSYLKTHVVLHKNVKDIEWFPCADCNYKAKTKGALKTHKYLNHSNVDEIRWFRCAHCDYKSKMKTSLQKHLLTHKDKGQVECFQCKKCPYMTKYKETFKQHVRIIHGNPKKITWFSCRDCTFKTKYKGYLIRHAEISRHMIIHKDIREIEWFYCVHCDYKASVKNNLKKHMVIHRDKMLQCNECSFQIRHRNALKSHETIHKDENEIRWFYCGHCEYKAKQKHSIKAHSVRHKDIRVELFQCTECTFKTKYRSYLKTHVVLHKNVEDIEWFPCADCNYKAKTKGALKTHKYLNHSNLDEIRWFRCAHCEYKSKMKTSLQKHLLTHKDKGQVECFQCKKCPYMTKYKETFKQHVRIIHGNPKKVTWFSCGDCTFKTKYKGYLIRHAKISRHMFIHKDIREIEWFYCAHCDYKAGVKNDLQKHMVMHRDKMFQCNKCSFRTRHRNALKSHETIHKDENEIRWFYCGHCDYKAKQKHSIKAHSVRHKDIRVELFQCTEYTFKTKYRSYLKTHVVLHKNVEDIEWFPCADCNYKAKTKGALKTHKYLNHSNLDEIRWFRCAHCDYKSKMKTSLQKHLLTHKDKGQVECFQCKKCPYMTKYKETFKQHVRIIHGNPKKSHGFRAGTALLRPNTKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -