Aaen062022.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755045.1:78434897-78436651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0048 0.59 12.7 1.1 1 23 13 35 13 35 0.97 2 18 0.0014 0.17 14.4 3.2 1 23 48 70 48 70 0.98 3 18 0.0022 0.27 13.8 5.4 1 23 81 103 81 103 0.97 4 18 0.00055 0.067 15.7 4.7 2 23 113 134 112 134 0.97 5 18 0.063 7.7 9.2 3.5 1 23 143 165 143 165 0.98 6 18 0.0034 0.42 13.2 1.0 1 23 174 196 174 196 0.97 7 18 0.00077 0.094 15.2 1.8 1 23 209 231 209 231 0.98 8 18 0.004 0.48 13.0 4.0 1 23 242 264 242 264 0.97 9 18 6.9 8.4e+02 2.8 1.8 10 23 282 295 273 295 0.86 10 18 4.5e-05 0.0055 19.1 5.1 1 23 304 326 304 326 0.98 11 18 0.0022 0.26 13.8 3.7 1 23 339 361 339 361 0.97 12 18 0.0018 0.22 14.1 6.0 1 23 372 394 372 394 0.97 13 18 0.0064 0.79 12.3 5.9 1 23 403 425 403 425 0.98 14 18 0.0055 0.68 12.5 3.9 1 23 434 456 434 456 0.98 15 18 0.0067 0.82 12.3 2.8 1 23 463 485 463 485 0.98 16 18 0.012 1.5 11.5 3.8 1 23 494 516 494 516 0.98 17 18 0.02 2.4 10.8 2.9 1 23 525 547 525 547 0.98 18 18 0.0023 0.28 13.7 0.9 2 23 553 575 552 575 0.97
Sequence Information
- Coding Sequence
- ATGCTAATACATAAAGACGGAAACGACgttaagtggtttccatgcaaacTATGCACATATAAAACGAAATGGAAAGATAATTTAAGAAAACACATACTAATACATGAAGACGACCATAGAGATGAAAACGAGATTATTTGGTTTCCATGCCAGCATTGTACATATAAGGCGAAACTGAAAAGTGAATTAACAAGACACATGCTAAAACATGAAAACATCCATAGAGACGAGACGAAATGGTTTCATTGCGCACATTGTAATTATAAAGCGAAACGGAAAGGTAATTTAACAAAGCACATGGTAAAACATAAGGACCTATGTAAAGTGGAGTGGCTTCGATGTGATAAGTGTAGTCATAGGACCAAATATAAGAGTAACTTAAAAACTCATATGAACATCCATAGAGACAAAAACcagattaagtggtttccatgcaaacattgcacATATAAAACGAAATGGAAATTTGGTTTAACTAAGCACATGCTAATACATAAAGACGGAAACGACgttaagtggtttccatgcaaacTATGCACATATAAAACGAAATGGAAAGATAATTTAAGAAGACACATACTAATACATGAAGACGTCCATAGAGATGAAAACGTGATTAATTGGTTTCCATGCCAGCTTTGTACATATAAATCGAAACTGAAAAGTGAATTAACAAGACACATGCTAAAACATGAAGACATCCATAGAGACGAGACAAAATGGTTTCATTGCGCACATTGTAATTATAAAGCGAAACGGAAAGGTGATTTAATAAAGCACATGGTAAAACATAAGGACCTAGGTAAAGTAGAGTGGTTTCGTTGTGATAAGTATAGTCATATGACCAAATATAAGAAATGCTTAAAAAGTCATATGAACATCCATAGAGACGAAAACCAGATTAAGTGGTTTTCATGCAAACATTGCACATATAAAACGAAACGGAAAGATAATTTAAGAAGACACATACTAATACATGAAGACGTCCATAGAGATGAAAACGAGATTAATTGGTTTCCATGCCAGCATTGTACATATAAATCGAAACTGAAAAGTGAATTAACAAGACACATGGTAAAACATGAAGACATCCATAGAGACGAGACGAAATGGTTTCATTGCGCACATTGTAATTATAAAACGAAACGGAAAGGTGATTTAACAAAGCACATGGTAAAACATAAGGACCTAGGTAAAGTAGAGTGGTTTCGATGTGATAAGTGTAGTCAGATGACCAAATATAAGAAATGCTTAAAAAGTCATATGAACATCCATAGAGACGAAAACCAGATTAAGTGGTTTTCATGCAAACATTGCACATATAAAACGAAATGGAAAGATAATTTAAGAAGACACATACTAATACATGAAAACGAGATTAATtggtttccatgcaaacattgtACATATAAATCGAAATGGAAAGATAATTTAAGAATACACATGCTAATGCATGAAAACATAAGTGAAGTAGAGTGGTTTCAATGTGAACAATGTACTTATAAGACTCATTATAAGCCTTACTTAAGAAAGCATATGATCATCCATAAAGACGAAGACAAGATTAAGTGGTTTTATTGCCCTAAATGCGATTTCAAAGCTAAAAGAAAGTTTAAGATAACAAGTCACATGCTAAAACATAGTGAAGTTCTGATTCAATGTGCACAGTGTGTGTATAAAACTAATTATAAGAATAACTTAAAAAGGCATATAATGACCATGCATAAAGACGAACAGTTTCAATTGCAGTTATAA
- Protein Sequence
- MLIHKDGNDVKWFPCKLCTYKTKWKDNLRKHILIHEDDHRDENEIIWFPCQHCTYKAKLKSELTRHMLKHENIHRDETKWFHCAHCNYKAKRKGNLTKHMVKHKDLCKVEWLRCDKCSHRTKYKSNLKTHMNIHRDKNQIKWFPCKHCTYKTKWKFGLTKHMLIHKDGNDVKWFPCKLCTYKTKWKDNLRRHILIHEDVHRDENVINWFPCQLCTYKSKLKSELTRHMLKHEDIHRDETKWFHCAHCNYKAKRKGDLIKHMVKHKDLGKVEWFRCDKYSHMTKYKKCLKSHMNIHRDENQIKWFSCKHCTYKTKRKDNLRRHILIHEDVHRDENEINWFPCQHCTYKSKLKSELTRHMVKHEDIHRDETKWFHCAHCNYKTKRKGDLTKHMVKHKDLGKVEWFRCDKCSQMTKYKKCLKSHMNIHRDENQIKWFSCKHCTYKTKWKDNLRRHILIHENEINWFPCKHCTYKSKWKDNLRIHMLMHENISEVEWFQCEQCTYKTHYKPYLRKHMIIHKDEDKIKWFYCPKCDFKAKRKFKITSHMLKHSEVLIQCAQCVYKTNYKNNLKRHIMTMHKDEQFQLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -