Aaen061980.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755045.1:77840702-77843773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00096 0.12 14.9 4.3 1 23 118 140 118 140 0.98 2 19 0.00011 0.014 17.9 3.1 1 23 148 170 148 170 0.98 3 19 0.00048 0.059 15.9 1.3 2 21 180 199 179 200 0.94 4 19 0.025 3 10.5 3.3 1 23 210 232 210 232 0.98 5 19 7.5e-05 0.0092 18.4 3.0 1 23 241 263 241 263 0.98 6 19 3.5e-05 0.0043 19.4 4.6 1 23 276 298 276 298 0.98 7 19 0.0073 0.89 12.2 6.1 2 23 308 329 307 329 0.97 8 19 0.011 1.4 11.6 3.1 1 23 338 360 338 360 0.98 9 19 2.9e-05 0.0036 19.7 4.9 1 23 373 395 373 395 0.98 10 19 0.0031 0.38 13.3 5.3 2 23 405 426 404 426 0.97 11 19 0.072 8.9 9.0 3.7 1 23 435 457 435 457 0.98 12 19 0.0031 0.38 13.3 5.3 2 23 467 488 466 488 0.97 13 19 0.072 8.9 9.0 3.7 1 23 497 519 497 519 0.98 14 19 0.026 3.2 10.4 3.2 1 23 528 550 528 550 0.98 15 19 0.0074 0.9 12.2 2.0 1 23 559 581 559 581 0.98 16 19 0.12 15 8.3 0.6 2 23 587 609 586 609 0.96 17 19 0.026 3.2 10.4 3.4 1 23 614 636 614 636 0.97 18 19 0.076 9.3 9.0 3.2 1 23 645 667 645 667 0.98 19 19 0.0082 1 12.0 1.1 1 23 676 698 676 698 0.98
Sequence Information
- Coding Sequence
- ATGAATCTGGAACTAACAGACTTCAAAATAAAAGCTGAAGATGAGATCAAGCAGGAGAAGCCTATGTTGGATGGCAGCTCATCTAAACCAACAGATCCAGATTCCCTGCCTTCTTCATCCAGCAGCATAAAGTCGGAATCATGTGACTTTGAACTGAAGACTGAAGAGGATATCAAGCAAGAAGAACTTATATTGGATGATAGCTCATCTGATCTTCATGAAGATTCAGCTGGTTCAAATATTTCTGAATGCCTTATTGGTGATCCTTTGGATTCCACCAACCAGACCTTGAATTATTTAAACGTCGAAAGTAAGTTTAAATATGAATCAAAGGACACTAAAGATAATCAGTTTCAATGTGAGCAGTGTACTTTTCGATGTAAAAATAAGTATTACTTAGAAACTCATATGATCGTCCATAAAGACAAAAACGAGAAGAGGTTTCCATGCCAGTATTGTACATATAAAGCCAAACGGAAAAGTCATTTAACAAGACACATATTAATACATAAAGACATGAGTGAAGTAGAGTGGCTTCGATGTGATAAGTGTAGTTATAGGACCAAATATAAGAGTAACTTAAAAACTCATATGAACATCCAAAGAGACAAAAACcagattaagtggtttccatgcaaacattgcacATATAAAACGAAATGGAAATATGGTTTAACAAAGCACATGCTAATACATAAAGACGGAAACGACgttaagtggtttccatgcaaacattgcacATATAAAACGAAACGGAAAGATGCTTTAAGAAGACACATACTAATACATGAAGACATCCATAGAGATGAAAACGAGATTAATtggtttccatgcaaacattgcacATATAAAACAAAACAGAAAGATGAGTTAACAAGACACATGCGGCTACATAAAGACATAAATGAAGTAGACTGGCTTCGATGTGATAAGTGTAGTCATAGGACCAAATATAAGAATAGCTTAAAAACTCATATGAAAACCCATAAAGACGGAAACGaaattaagtggtttccatgcaaacattgtacatttaaaacgAAATGGAAAGATAATTTAAGAAGACACATACTAATACATGAAGACGTCCATAGAGATGAAAACGAGATTAATtggtttccatgcaaacattgcacATATAAAACAAAACGGAAAGATGAGTTAACAAGACACATGCGGCTACATAAAGACATAAATGAAGTAGAGTGGCTTCGATGTGATAAGTGTAGTCATAGGACCAAATATAAGAAGAACTTAAAAACTCATATGAATATCCATAAAGACGGAAACGacattaagtggtttccatgcaaacattgtacatttaaaacgAAATGGAAAGATAGTTTAAGAATACACATgctaaaacataaaaacataagTAAAGTAGAGTGGCTTCGATGTGATAAGTGTAGTCATAGGACCAAGTATAAGAAGAACTTAAAAACTCATATGAATATCCATAAAGACGGAAACGacattaagtggtttccatgcaaacattgtacatttaaaacgAAATGGAAAGATAGTTTAAGAATACACATgctaaaacataaaaacataagTGAAGTAGAGTGGTTTCAATGTGAACAATGTACTTATAAGACTCATTATAAGCCTTACTTAAGAAAGCATATCATCATCCATAAAGACGAAGACAAGATTAAGTGGTTTTATTGCCCTAAATGCGATTTCAAAGCTAAAAGAAAGTTTGAGATAACAAGTCACATGTTAAAACATAGTGAAGTTCTGATGCAATGTGCACAGTGTATGTATATAACTAAATATAAGATTAACTTAAAAACGCATATAATGACCATGCATAAGGACGAACAGTTTCAATGCATCCATTGCAGTTATAAAACGAAAGTGAAACGTAATTTAGCTAGACACATGCTTAGCCATAAACACATAAGTGATTTTAGGTGTTTCCAGTGCGAAAAGTGTAGTTTTAAGACAAAATATAGTAGAGCCTTTAAACAGCATGAGATAACACATAAAGAAGTTAATGAAGTCGAGTGGTTTAAATGCGCTGATTGCTATTTTAAAACTGCACGAAAAAGTCGTTTAAGAGGGCACATGCTTATACATAAAGTTATAAGTGAAGTTAAGTGGTTTTAA
- Protein Sequence
- MNLELTDFKIKAEDEIKQEKPMLDGSSSKPTDPDSLPSSSSSIKSESCDFELKTEEDIKQEELILDDSSSDLHEDSAGSNISECLIGDPLDSTNQTLNYLNVESKFKYESKDTKDNQFQCEQCTFRCKNKYYLETHMIVHKDKNEKRFPCQYCTYKAKRKSHLTRHILIHKDMSEVEWLRCDKCSYRTKYKSNLKTHMNIQRDKNQIKWFPCKHCTYKTKWKYGLTKHMLIHKDGNDVKWFPCKHCTYKTKRKDALRRHILIHEDIHRDENEINWFPCKHCTYKTKQKDELTRHMRLHKDINEVDWLRCDKCSHRTKYKNSLKTHMKTHKDGNEIKWFPCKHCTFKTKWKDNLRRHILIHEDVHRDENEINWFPCKHCTYKTKRKDELTRHMRLHKDINEVEWLRCDKCSHRTKYKKNLKTHMNIHKDGNDIKWFPCKHCTFKTKWKDSLRIHMLKHKNISKVEWLRCDKCSHRTKYKKNLKTHMNIHKDGNDIKWFPCKHCTFKTKWKDSLRIHMLKHKNISEVEWFQCEQCTYKTHYKPYLRKHIIIHKDEDKIKWFYCPKCDFKAKRKFEITSHMLKHSEVLMQCAQCMYITKYKINLKTHIMTMHKDEQFQCIHCSYKTKVKRNLARHMLSHKHISDFRCFQCEKCSFKTKYSRAFKQHEITHKEVNEVEWFKCADCYFKTARKSRLRGHMLIHKVISEVKWF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00169778;
- 90% Identity
- iTF_00169778;
- 80% Identity
- -