Aaen062186.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755046.1:353394-357435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.84 1e+02 5.7 0.1 9 23 126 140 119 140 0.92 2 19 9.5e-05 0.012 18.1 2.2 2 23 150 171 149 171 0.96 3 19 0.33 41 6.9 9.5 2 23 181 202 180 202 0.97 4 19 0.048 5.9 9.6 1.6 2 23 212 233 211 233 0.94 5 19 0.0014 0.17 14.4 3.3 1 23 242 264 242 264 0.98 6 19 0.00043 0.053 16.0 1.2 2 23 274 295 273 295 0.94 7 19 2.9e-05 0.0036 19.7 4.9 1 23 308 330 308 330 0.98 8 19 0.0031 0.38 13.3 4.0 2 23 340 361 339 361 0.97 9 19 4.5e-05 0.0056 19.1 4.7 1 23 370 392 370 392 0.98 10 19 0.0038 0.47 13.1 5.4 2 23 402 423 401 423 0.97 11 19 0.022 2.6 10.7 4.4 1 23 432 454 432 454 0.98 12 19 0.0025 0.31 13.6 4.9 1 23 463 485 463 485 0.98 13 19 0.00021 0.026 17.0 6.1 1 23 494 516 494 516 0.98 14 19 7.1e-05 0.0087 18.5 6.0 1 23 529 551 529 551 0.98 15 19 0.0077 0.94 12.1 1.8 1 23 564 586 564 586 0.98 16 19 0.16 19 8.0 1.8 1 23 591 614 591 614 0.96 17 19 0.00038 0.046 16.2 2.3 1 23 619 641 619 641 0.97 18 19 0.091 11 8.7 3.2 1 23 650 672 650 672 0.98 19 19 0.18 22 7.8 3.4 1 23 681 703 681 703 0.97
Sequence Information
- Coding Sequence
- ATGAATTTGGAACTAAAAGACATCAACACAAAAGCTGAAGATGAGATCAAGCAGGAGAAGCCTATGTTGGATGGCAGCTCATCTAAACCAGCAGATCCAGATCCCCTGCCTTCTTTATCTAGCAGCATAAAATCGGAACCATATGAGTTTGAACTGAAGACTGAAGAGGATATCAAGCAAGAAGAACTTATATTGGATGACAGTTCATCTGATTATCATGAAGATTCAGCTAGTTCAAATATTTCTCAAGGCCTTATTGGTGATCCTTTGGATTCCAGCAACCGGAccttgaattatttaaatgtcgaaagtaagtttaaatataaatcaaaagACACTAAAGATAATCAGTTTCAATGTGAGCAGAGTACTTTTCGATGTAAAAATAAGTATTACTTAGAAACGCATATGATCGTCCATAAAGACAAAAACAAGATTAAGTGGTTGTCATGCAAGCAATGCACATATAAAACGAAACGGAAAGATGATTTAAGAAGACACATGTTAATACATGAAGATATAAGTGAAGTAGAGTGGCTTCAATGTGATAAGTGTAGTCATAAGACTAAATATAAGCATTGCTTAAAAACTCACATGAACATCCATAAAAACGAAAACGAGATTCAGTGGTTTCTCTGCATGTTTTGCAATGTTAAAATGAAACAGAAAACTGATTTAAGAAAACACATGCTAATACATAAAGACGAAAACGacattaagtggtttccatgcaaacattgcacATATAAAACGATACTAAAAAAAGATTTAACAAGACACATGCAAATAcataaagacgaaaacgagattaagtggtttcTCTGCATGCTTTGCAATGTTAAAACGAAACAGAAAAGTGATTTAAAAAGACACATGCTCATACATGAAAACATCCATAGAGACGAAAACGAGATTAATtggtttccatgcaaacattgcacATATAAAACGAAACGGAAAGATGAGTTAACAAGACACATGCGGCTACATAAAGACAAAAGTGAAGTAGAGTGGCTTCGATGTGATAAGTGTAGTCATAAGACCAAATATAAGAATAACTTAAAAATTCATATGAAcatccataaagacgaaaacgagattaaatggtttccatgcaaacattgcacATATAAATCGAAACGTAAAGATGAGTTAACAAGACACATGCGGCTACATAAAGACAAAAGTGAAGTAGAGTGGCTTCGATGTGATAAGTGTAGTCATAAGACCAAATataagaaaaacttaaaaactcatatgaacatccataaagacgaaaacgacattaagtggtttccatgcaaacattgcacATATAAAACGAGATGGAAAACTGATTTAACAAGACACATGCTAAAACATAAAGACATAAGTGAATTAGAGTGTTTTCGATGTGATAAGTGTAGTCATAAGACCAAATATAAGATAAACTTAAAAAGTCATATGAAcatccataaagacgaaaacgagattaagtggtttACATGCAAATATTGCACACATAAAACGAAACGGAAAGATGCTTTAAGAAGACACATGTTAAAACATGAAGAcatccataaagacgaaaacgagattaagtggtttcAATGCAAACATTGCACATATAAAACGAAACGGAAAGATGCTTTAAGAAGACACATGTTGAAACATAAAGAcatccataaagacgaaaacaAGATTAAGTGGTTTTATTGCCCTAAATGCGATTACAAAGCTAAAAGAAATTTTCAGATATCAAGTCACATGCTAAAACATAGTGGAGTTATGTTTCAATGTGCACAGTGTATGTATAGAACTATATATAAGAATAACTTAAAAACGCATATAATGCAAAAGCATAAAGACGAACAATTTCAATGCATCCATTGCGGTTATAAAACGAAAGTGAAAAGTAATTTAGCAAGACACATGCTTAGCCATAAACACATAAGTGATTTTAGGTGTTTCCAGTGCGAAAAGTGTAGTTTTGAGACAAAATACAGTAGAGCCTTTAAACAGCATAAGATAACACATAAAGAAGTTAATCAAGTCGAGTGGTTTCACTGCGCTCAGTGTTATTTTAAAACTGAACGAAAAAGTCGTTTAAGAGAGCACATGCTTATACATAAAGTTATAAGACTAAGTTAA
- Protein Sequence
- MNLELKDINTKAEDEIKQEKPMLDGSSSKPADPDPLPSLSSSIKSEPYEFELKTEEDIKQEELILDDSSSDYHEDSASSNISQGLIGDPLDSSNRTLNYLNVESKFKYKSKDTKDNQFQCEQSTFRCKNKYYLETHMIVHKDKNKIKWLSCKQCTYKTKRKDDLRRHMLIHEDISEVEWLQCDKCSHKTKYKHCLKTHMNIHKNENEIQWFLCMFCNVKMKQKTDLRKHMLIHKDENDIKWFPCKHCTYKTILKKDLTRHMQIHKDENEIKWFLCMLCNVKTKQKSDLKRHMLIHENIHRDENEINWFPCKHCTYKTKRKDELTRHMRLHKDKSEVEWLRCDKCSHKTKYKNNLKIHMNIHKDENEIKWFPCKHCTYKSKRKDELTRHMRLHKDKSEVEWLRCDKCSHKTKYKKNLKTHMNIHKDENDIKWFPCKHCTYKTRWKTDLTRHMLKHKDISELECFRCDKCSHKTKYKINLKSHMNIHKDENEIKWFTCKYCTHKTKRKDALRRHMLKHEDIHKDENEIKWFQCKHCTYKTKRKDALRRHMLKHKDIHKDENKIKWFYCPKCDYKAKRNFQISSHMLKHSGVMFQCAQCMYRTIYKNNLKTHIMQKHKDEQFQCIHCGYKTKVKSNLARHMLSHKHISDFRCFQCEKCSFETKYSRAFKQHKITHKEVNQVEWFHCAQCYFKTERKSRLREHMLIHKVIRLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -