Aaen033657.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- X-element\ORF2_3
- Assembly
- GCA_963576565.1
- Location
- OY755041.1:25825100-25860901[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0027 0.33 13.5 0.1 1 23 201 223 201 223 0.99 2 12 0.14 18 8.1 1.0 1 23 229 251 229 251 0.95 3 12 0.00029 0.035 16.6 2.8 1 23 257 279 257 279 0.98 4 12 0.0012 0.15 14.6 4.0 3 23 674 694 672 694 0.95 5 12 0.00017 0.021 17.3 0.6 1 23 700 722 700 722 0.98 6 12 1.6e-05 0.0019 20.6 3.7 1 23 728 750 728 750 0.98 7 12 1.1e-06 0.00013 24.2 1.4 1 23 756 778 756 778 0.99 8 12 6.4e-07 7.8e-05 24.9 0.3 1 23 784 806 784 806 0.99 9 12 2.8e-05 0.0035 19.8 0.7 1 23 812 834 812 834 0.99 10 12 0.00055 0.068 15.7 0.5 1 23 840 862 840 862 0.96 11 12 7.4e-05 0.0091 18.4 0.8 2 23 870 892 869 892 0.95 12 12 0.011 1.3 11.7 0.3 3 23 900 921 898 921 0.92
Sequence Information
- Coding Sequence
- atgGTTTTCCAAAACGATGGACTTTCACAGCAGATGTGCGTGCAGTGTGTCCTGCAATGCAGCAGAGCCTTTACCTTCAAGCAGTTATGTGAAAGATCCGATGGACTCGCGCGGGCATATATCTCTCCCGAGTTTCAGTATGAACGAACGAAACACCTTGCACAGCAAAGTCTCAAGGACAGTCTCCGAGAACAGTTGCAATTTTCCGACGAGAACGTGACTGTAATTGACGACAACGAGAAGATCGATTTTAGCTATGTGGTCTACACCGAACCCGATTCTGGCCATGATGAAATCATCGATGTTAAGGACTTTAAGAATGGCATATACCTGGTTCAAAATGCAGAAATGGTCCAAAATGCAGACATGGTTCAAACTGCAGACTTGTTGGAGGATAATCAATCACAAGATGCCATTGACCAAGAGGAGGAAGATATTGAGACGCAAATCATTGAAGAGCCACAGATGGGACACGAAGAAGAAGTGGTGGGAGTATCTTTGCCAATAGTAGTATTAAAACGGGAAGAGACTCAGAAGAAAACAACCGATATTGATAGCTCTGACACAAATGAGAAAAAATCTTCGAAGAAGCGGAAACTTTATGAGTGCGAAATATGTGGTGTCGAATACGCGCTGAAAGTGGATTACAAGCTCCACTTGATGACCCATCCAAAGGAAAACAGTTTCTTCTGCACGGTCTGCAAGAAAGGATTCGCCGAGCTGCGCATTCTTAAACGTCACTCGAAAATTCATTTGGCCGATAAGCCACACAAGTGCGACCAGTGCGACATGACCTTTGCCGAGAGCTCTAATCTGGGCAAGCATAAGAAAAAACACACAGGTCATGATGGCATAAATCTAAAAATGATCTTACTTTTAACTCCGTACCTGATCGCTCATATTACCTTTATTATTAATAAGTGCATACAAACAAAAAGAGTCCCTTCCCAGTGGAAACTTGCAAATGTCTTACCAGTTGCAAAAAAGTCTATACCTTTAGAACTAAACGATTTTAGGCCTATAAGTATCTTGCCAACTATGtccaaaattttagaaaaactccTTTTTGAACAATTAATGTATCACCTGGAACAAAACAATATCTTGCCGTCCACACAGTCTGGCTTTAGGGCCAATCATAGTACAACCACAGCTTTGCTTAAAGTAACTGATGATGTTTTACAGGCTTCAGATCAGGGCAAATGTACTTGCTTAGTTCTTCTAGACTACAGCAAGGCATTTGATACTTTGATCCATAAAATATTACTTACAAAGCTTGGCTGCTTTGGTTTGAGTCCTGAAGCGATTGATATGTTGGCAGACTACTTTAGCGAAAGGTTACAAAGAGTTGTTTTTAGTGGCCAGTGTTCTACAACCTCATTGCAGGAAATGGGAGTACCACAAGGGAGTATTTTAGGCCCGCTAATTTTTACTTTATACACAGCTgatttccaaatttttttaaagcatatgTCTGGCCATCAGTTTGCCGATGACTACCAGCTTCAATTTTCTTTTCACAAAACACAAGTTGAAACggcgaaaaataaaattaacgaAGATCTTGCTACAATCCAAAGAGTGTCACAACAACACGGACTTATTCTAAATGCAACAAAAACGCAAGCAATCGTCTTTGGTAATACCAGAAAACAATGCATTGAAAATGGGTTTAAAATTTCTATTGATCAAACTCAAATTGAGTTTAGTGACTGTGTTAAAAACTTAGGCATTATGATAGATTATGATTTAAAATATGAATCTCATGTTTCTAAACTGATGCAAAAAAGTTACGGTAAACTTAAAATGTTGTATTTACATAAAAGCTACCTATCCACCAAAGTAAAACTTAGACTATGTGAATCTTTAATCCTCTCGCAGTTATCTTACTGCGACACTCTGTATTGGCCAGCACTTTTAGAGAAAGACAAAGTTAGTCTTCAAAAGCTACAAAATGCCTGTCTAGGATTTTCATATGGTGTACGTGAATTAAGAAACGTCCAAGGTAAACCCCATCTGTGCTCGATTTGCGGCAGAGCTTTTAAATGGTCTTCAAGCTTACACAAACACATGAAATATCACACAGGACACAAGCTATTTTCGTGCACATATTGTCAGAAGCAATATGTAGAGGCAAGGAGCCTGGAAATCCACATACGTTCTCACACAGGAGAAAGACCGTACTCTTGCAACTATTGCGAAAAAACGTTCACACAGATGTGCAATTTGGACAAGCACATTCGAGTACACACTGGCGAACGGCCTTATAAATGTCCGGTTTGTCATAAGGGTTTCACTCAATCCGGCTACGTTACGGTTCATATGAGAATGCACACCGGTGACAAACCGTACGTTTGTCAAATCTGCGGTAAATCGTTTGCTGGTTCGAACACGCTCAACATCCATCAAAGGACGCACACCGGAGAACGACCCTACACGTGCACCATCTGCAGCAGAGGCTTCAGCCGACAAGAGTCTTTAGATATGCACACAAGGATACATACAGGTGATAAACCTCATGCCTGCAACGTATGTTCGAAAAATTTTTATTCTGCCGGTATGCTGGCAAGTCATCTTAAAATTCATGCGATGAAAGATGTTGTACTTAACTGTGATTTCTGTGATAAAACATTCAACCAGGCAGCCAAACTGAACTTGCACATAAAGAAAAACCACGCAGACAAAAAATCACTGATCTGCCAGGCGTGCAACAGGAGTTTTTACACGCTCACGAAATTAAACCAGCACATTGTTTCCGTACATACGCGTCAATTGGACACTGCTGCCACCACAGCAATTGAGCTTAAAGAGGAACTGAGTGGAATTGAGGGGTTTCAGGTTACTGAAATTTTGTAA
- Protein Sequence
- MVFQNDGLSQQMCVQCVLQCSRAFTFKQLCERSDGLARAYISPEFQYERTKHLAQQSLKDSLREQLQFSDENVTVIDDNEKIDFSYVVYTEPDSGHDEIIDVKDFKNGIYLVQNAEMVQNADMVQTADLLEDNQSQDAIDQEEEDIETQIIEEPQMGHEEEVVGVSLPIVVLKREETQKKTTDIDSSDTNEKKSSKKRKLYECEICGVEYALKVDYKLHLMTHPKENSFFCTVCKKGFAELRILKRHSKIHLADKPHKCDQCDMTFAESSNLGKHKKKHTGHDGINLKMILLLTPYLIAHITFIINKCIQTKRVPSQWKLANVLPVAKKSIPLELNDFRPISILPTMSKILEKLLFEQLMYHLEQNNILPSTQSGFRANHSTTTALLKVTDDVLQASDQGKCTCLVLLDYSKAFDTLIHKILLTKLGCFGLSPEAIDMLADYFSERLQRVVFSGQCSTTSLQEMGVPQGSILGPLIFTLYTADFQIFLKHMSGHQFADDYQLQFSFHKTQVETAKNKINEDLATIQRVSQQHGLILNATKTQAIVFGNTRKQCIENGFKISIDQTQIEFSDCVKNLGIMIDYDLKYESHVSKLMQKSYGKLKMLYLHKSYLSTKVKLRLCESLILSQLSYCDTLYWPALLEKDKVSLQKLQNACLGFSYGVRELRNVQGKPHLCSICGRAFKWSSSLHKHMKYHTGHKLFSCTYCQKQYVEARSLEIHIRSHTGERPYSCNYCEKTFTQMCNLDKHIRVHTGERPYKCPVCHKGFTQSGYVTVHMRMHTGDKPYVCQICGKSFAGSNTLNIHQRTHTGERPYTCTICSRGFSRQESLDMHTRIHTGDKPHACNVCSKNFYSAGMLASHLKIHAMKDVVLNCDFCDKTFNQAAKLNLHIKKNHADKKSLICQACNRSFYTLTKLNQHIVSVHTRQLDTAATTAIELKEELSGIEGFQVTEIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -