Basic Information

Insect: Aspidapion aeneum
Gene Symbol: RREB1
Assembly: GCA_963576565.1
Location: OY755043.1:11289769-11292617[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00031 0.038 16.5 0.9 1 23 23 46 23 46 0.96

2 16 0.0083 1 12.0 1.5 3 23 91 112 89 112 0.95

3 16 1.3 1.6e+02 5.1 0.8 1 23 128 150 128 150 0.95

4 16 0.0033 0.41 13.2 0.1 1 23 160 183 160 183 0.95

5 16 0.0014 0.17 14.4 4.0 1 23 204 226 204 226 0.98

6 16 0.002 0.25 13.9 2.9 1 23 233 255 233 255 0.98

7 16 0.00013 0.015 17.7 0.7 1 23 261 283 261 283 0.96

8 16 3.5e-05 0.0043 19.5 3.6 1 23 289 312 289 312 0.97

9 16 0.0016 0.19 14.3 0.4 1 23 342 365 342 365 0.96

10 16 0.00078 0.095 15.2 0.1 2 23 411 433 410 433 0.96

11 16 0.098 12 8.6 0.3 1 23 449 471 449 471 0.97

12 16 0.11 13 8.5 0.3 1 23 480 503 480 503 0.95

13 16 0.00014 0.017 17.6 6.5 1 23 525 547 525 547 0.97

14 16 0.00024 0.029 16.9 0.1 2 23 555 576 554 576 0.97

15 16 7.7e-05 0.0094 18.4 1.0 1 23 582 604 582 604 0.98

16 16 4.5e-07 5.6e-05 25.4 1.1 1 23 610 633 610 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00031	0.038	16.5	0.9	1	23	23	46	23	46	0.96
2	16	0.0083	1	12.0	1.5	3	23	91	112	89	112	0.95
3	16	1.3	1.6e+02	5.1	0.8	1	23	128	150	128	150	0.95
4	16	0.0033	0.41	13.2	0.1	1	23	160	183	160	183	0.95
5	16	0.0014	0.17	14.4	4.0	1	23	204	226	204	226	0.98
6	16	0.002	0.25	13.9	2.9	1	23	233	255	233	255	0.98
7	16	0.00013	0.015	17.7	0.7	1	23	261	283	261	283	0.96
8	16	3.5e-05	0.0043	19.5	3.6	1	23	289	312	289	312	0.97
9	16	0.0016	0.19	14.3	0.4	1	23	342	365	342	365	0.96
10	16	0.00078	0.095	15.2	0.1	2	23	411	433	410	433	0.96
11	16	0.098	12	8.6	0.3	1	23	449	471	449	471	0.97
12	16	0.11	13	8.5	0.3	1	23	480	503	480	503	0.95
13	16	0.00014	0.017	17.6	6.5	1	23	525	547	525	547	0.97
14	16	0.00024	0.029	16.9	0.1	2	23	555	576	554	576	0.97
15	16	7.7e-05	0.0094	18.4	1.0	1	23	582	604	582	604	0.98
16	16	4.5e-07	5.6e-05	25.4	1.1	1	23	610	633	610	633	0.98

Sequence Information

Coding Sequence: ATGCTAACAGAAGAACTAGACAATGGGGTGCAAGAGAATGTATCTTTAAAGAAAGACCTACATCGATATTTTTGCAAAGTTTGCGGAAAAAGGTTCCCATATGAATTTGCATTAATAAGTCATGAAAAGAAACAGCATAATCAGTCTCCCTGCAAACTTTGTTCTCAAAATAATGTAGATATAACCGATCCTTTAGATATAGAAGTATCCTATAAGAAAGCTAGTTGTAGCATATGCagagttaaaaataaaaataaattcagTATTTGTTGTACAAGATGTGGAAAGCTATTGTCGAATCAAAGATTTTTAAATGATCATATAAGAATAGTACACGATGAACCCGAATTTGCCATGCAATTTAAGAATGACAATGGTACTTTTAAATGTCCGACATGCAAAGATATATTACCAAATATTCGAAACTTTTTAAGGCATTTTAAAGAACATAACGGTAAAAAAAAGACCTACCTTAAACACGTTTGCGAAATCTGTGGAAAGGCACTAGCTTCTAAGTTTACATTAGATGTTCATCGTGAAATTGTACACTCAAAGTTTCGAAAACCAGTTGTTAAAGTTAATGACGAATTTAAGGACGAAGAAGGTTTGTATCACTGTCCGTCATGtgaaaaaacttttaataaatcATTATATTTGTCCAGGCACCGAAGGGAACATACTCAAGGTAAAAAAACATTTACCTGTGAAGTTTGCGGAAAAATTGTTACGTCGTATTGTAGCTTTCGGGATCATAAGAGAATGCACACTGGGGAAAAACCCTTTAACTGTGAATACTGTCAAAGAGCTTTCATCAGTAAAAAACTGTTAAAAGTACATCGAGTTGTTCACACCAAAGAGAGACCTCATAAATGCACCCTGTGTGAAAAAACTTTTACTCAAAGAAGTCCATTGGTGCGACATTTGAAAAAGAATCATGTTGATCAATCggGTTCTGTAAGCAAAGCCTCCGAAGTTTCGTTCAGAAACATGCAAGATAGCTATAAAAATAACGATCGGCACcgatatttttgtaaagtttgtGGAAAAGGTTTTAGATTTATATTTGCACTGGAGGACCacgaaaataaaatacataatgCTACAAATCAATTACGTAACAAAAACTGCAaattttgtcttaaaaatgcCGGTCTATTGCGCAAAGAAAGTGCCTCCAAGAGAGCCAGACTTCGCGTTTGTAGTTTGCATAAATTGGATAAAACTCGGATTCCATGCGAAATGTGTGGAAAACTACTAGGCGataaagcaaatttaaataatcACATTAAAAAGGTGCACAACGAACCAAATTCtgtcttaaaatataaaaatgaaaatggtacGTATGATTGTCCAACATGTAAAGAAACCGTGTCCGGTATTCGAAAATTTTTAAGACATTTAAAAGCTCATACTAGAGATAGGGCCCTCACGAAACATATTTGCGAACTGTGTGGAAAAGAGTTACTGTCAAGATATAGCTTAGCAATTCATCTTGAAACTAGGCACTCTGGACCCGGAAAGCTAACTGCGCTTGAGTACAACGCACAATTTAAAGATGAAAGAGATATATATCATTGTCCAACATGCAAAAAAACCTATACTAATTCAGGACATTTCACAAGGCACCTAAAGGATCATATCAGAGGGAAAAAGACATGGACTTGTGAAGTATGTGGAAAAGTTGTTACAAGCGGCACCAGCCTTCGAGATCACATGAAACTACATACTGGAGAAAAACCGTATAAATGTGGGTACTGTCAAAAAGCTTTCGCTAAAAGGCACGTCCTGAAAGCACATCTAATTGTACATACAAAAGAAAGACCTTACAAATGTGCAATATGTCCACAAACATTTACTCAAAGAGGTTCTTTAAAACGACATCTCAAGACGAATCATAAAGATATCGATAGAGGACAGCAGGATAATTCCTACAATTTGGTTACAACCCCGTGGGATATGGTCTga
Protein Sequence: MLTEELDNGVQENVSLKKDLHRYFCKVCGKRFPYEFALISHEKKQHNQSPCKLCSQNNVDITDPLDIEVSYKKASCSICRVKNKNKFSICCTRCGKLLSNQRFLNDHIRIVHDEPEFAMQFKNDNGTFKCPTCKDILPNIRNFLRHFKEHNGKKKTYLKHVCEICGKALASKFTLDVHREIVHSKFRKPVVKVNDEFKDEEGLYHCPSCEKTFNKSLYLSRHRREHTQGKKTFTCEVCGKIVTSYCSFRDHKRMHTGEKPFNCEYCQRAFISKKLLKVHRVVHTKERPHKCTLCEKTFTQRSPLVRHLKKNHVDQSGSVSKASEVSFRNMQDSYKNNDRHRYFCKVCGKGFRFIFALEDHENKIHNATNQLRNKNCKFCLKNAGLLRKESASKRARLRVCSLHKLDKTRIPCEMCGKLLGDKANLNNHIKKVHNEPNSVLKYKNENGTYDCPTCKETVSGIRKFLRHLKAHTRDRALTKHICELCGKELLSRYSLAIHLETRHSGPGKLTALEYNAQFKDERDIYHCPTCKKTYTNSGHFTRHLKDHIRGKKTWTCEVCGKVVTSGTSLRDHMKLHTGEKPYKCGYCQKAFAKRHVLKAHLIVHTKERPYKCAICPQTFTQRGSLKRHLKTNHKDIDRGQQDNSYNLVTTPWDMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -