Aaen062023.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755045.1:78434897-78439404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0018 0.22 14.1 2.6 1 23 118 140 118 140 0.97 2 23 0.00092 0.11 15.0 4.3 1 23 149 171 149 171 0.98 3 23 0.00041 0.05 16.1 1.9 1 23 182 204 182 204 0.97 4 23 0.00084 0.1 15.1 4.7 2 23 214 235 213 235 0.97 5 23 0.021 2.6 10.7 3.3 1 23 244 266 244 266 0.98 6 23 0.0074 0.91 12.2 1.1 1 23 275 297 275 297 0.97 7 23 0.0021 0.26 13.8 3.2 1 23 310 332 310 332 0.98 8 23 0.0033 0.41 13.2 5.4 1 23 343 365 343 365 0.97 9 23 0.00084 0.1 15.1 4.7 2 23 375 396 374 396 0.97 10 23 0.097 12 8.6 3.5 1 23 405 427 405 427 0.98 11 23 0.0053 0.65 12.6 1.0 1 23 436 458 436 458 0.97 12 23 0.0012 0.15 14.7 1.8 1 23 471 493 471 493 0.98 13 23 0.0061 0.74 12.4 4.0 1 23 504 526 504 526 0.97 14 23 7.4 9.1e+02 2.7 1.2 10 23 544 557 536 557 0.88 15 23 7e-05 0.0085 18.5 5.1 1 23 566 588 566 588 0.98 16 23 0.0033 0.41 13.2 3.7 1 23 601 623 601 623 0.97 17 23 0.0027 0.33 13.5 6.0 1 23 634 656 634 656 0.97 18 23 0.0099 1.2 11.8 5.9 1 23 665 687 665 687 0.98 19 23 0.0085 1 12.0 3.9 1 23 696 718 696 718 0.98 20 23 0.01 1.3 11.7 2.8 1 23 725 747 725 747 0.98 21 23 0.019 2.3 10.9 3.8 1 23 756 778 756 778 0.98 22 23 0.03 3.7 10.2 2.9 1 23 787 809 787 809 0.98 23 23 0.0035 0.43 13.2 0.9 2 23 815 837 814 837 0.97
Sequence Information
- Coding Sequence
- ATGAATCCGGAACTAACAGACTTCAAAATAAAAGATGAAGATGAGATCAAGCAGGAGAAGCCTATGTTGGATGGCAGCTCATCTAAACCAACAGATCCAGATTCCCTGCCTTCTTCATCCAGCAGCATAAAGTCGGAATCATGTGACTTTGAACTGAAGACTGAAGAGGATATCAAGCAAGAAGAACTTATATTGGATGACAGCTCATCTGATCTTCATGAAAATTCAGCTGGTTCAAATATTTCTGAATGCCTTATTGGTGGTCCTTTGAATTCCACCAACCAGACCTTGAATTATTTAAACGTCGAAAGTAAGATTAAATATGAATCAAAGGACACTAAAGATAATCAGTTTCAATGTAAGCAGTGTACTTTTCGAAGTAAAAATAGATATTACTTAAAAGCGCATATGGTCATCCATGAAGACAaaaacgagattaagtggtttccatgccaGCATTGTACATATAAAACGAAACTGAAAAGTGAATTAACAAGACACATGCTAAAACATGAAGACATCCATAAAGACGAGACGAAATGGTTTTATTGCGCACTTTGTAATTATAAAACGAAACGGAAAGGTGATTTAACAAAGCACATGGTAAAACATAAGGACCTATGTAAAGTGGAGTGGCTTCGATGTGATAAGTGTAGTCATAGGACCAAATATAAGAGTAACTTAAAAACTCATATGAACATCCATAGAGACAAAAACcagattaagtggtttccatgcaaacattgcacATATAAAACGAAATGGAAATATAGTTTAATAAAGCACATGCTAATACATAAAGACGGAAACGACgttaagtggtttccatgcaaacTATGCACATATAAAACGAAATGGAAAGATAATTTAAGAAAACACATACTAATACATGAAGACGACCATAGAGATGAAAACGAGATTATTTGGTTTCCATGCCAGCATTGTACATATAAGGCGAAACTGAAAAGTGAATTAACAAGACACATGCTAAAACATGAAAACATCCATAGAGACGAGACGAAATGGTTTCATTGCGCACATTGTAATTATAAAGCGAAACGGAAAGGTAATTTAACAAAGCACATGGTAAAACATAAGGACCTATGTAAAGTGGAGTGGCTTCGATGTGATAAGTGTAGTCATAGGACCAAATATAAGAGTAACTTAAAAACTCATATGAACATCCATAGAGACAAAAACcagattaagtggtttccatgcaaacattgcacATATAAAACGAAATGGAAATTTGGTTTAACTAAGCACATGCTAATACATAAAGACGGAAACGACgttaagtggtttccatgcaaacTATGCACATATAAAACGAAATGGAAAGATAATTTAAGAAGACACATACTAATACATGAAGACGTCCATAGAGATGAAAACGTGATTAATTGGTTTCCATGCCAGCTTTGTACATATAAATCGAAACTGAAAAGTGAATTAACAAGACACATGCTAAAACATGAAGACATCCATAGAGACGAGACAAAATGGTTTCATTGCGCACATTGTAATTATAAAGCGAAACGGAAAGGTGATTTAATAAAGCACATGGTAAAACATAAGGACCTAGGTAAAGTAGAGTGGTTTCGTTGTGATAAGTATAGTCATATGACCAAATATAAGAAATGCTTAAAAAGTCATATGAACATCCATAGAGACGAAAACCAGATTAAGTGGTTTTCATGCAAACATTGCACATATAAAACGAAACGGAAAGATAATTTAAGAAGACACATACTAATACATGAAGACGTCCATAGAGATGAAAACGAGATTAATTGGTTTCCATGCCAGCATTGTACATATAAATCGAAACTGAAAAGTGAATTAACAAGACACATGGTAAAACATGAAGACATCCATAGAGACGAGACGAAATGGTTTCATTGCGCACATTGTAATTATAAAACGAAACGGAAAGGTGATTTAACAAAGCACATGGTAAAACATAAGGACCTAGGTAAAGTAGAGTGGTTTCGATGTGATAAGTGTAGTCAGATGACCAAATATAAGAAATGCTTAAAAAGTCATATGAACATCCATAGAGACGAAAACCAGATTAAGTGGTTTTCATGCAAACATTGCACATATAAAACGAAATGGAAAGATAATTTAAGAAGACACATACTAATACATGAAAACGAGATTAATtggtttccatgcaaacattgtACATATAAATCGAAATGGAAAGATAATTTAAGAATACACATGCTAATGCATGAAAACATAAGTGAAGTAGAGTGGTTTCAATGTGAACAATGTACTTATAAGACTCATTATAAGCCTTACTTAAGAAAGCATATGATCATCCATAAAGACGAAGACAAGATTAAGTGGTTTTATTGCCCTAAATGCGATTTCAAAGCTAAAAGAAAGTTTAAGATAACAAGTCACATGCTAAAACATAGTGAAGTTCTGATTCAATGTGCACAGTGTGTGTATAAAACTAATTATAAGAATAACTTAAAAAGGCATATAATGACCATGCATAAAGACGAACAGTTTCAATTGCAGTTATAA
- Protein Sequence
- MNPELTDFKIKDEDEIKQEKPMLDGSSSKPTDPDSLPSSSSSIKSESCDFELKTEEDIKQEELILDDSSSDLHENSAGSNISECLIGGPLNSTNQTLNYLNVESKIKYESKDTKDNQFQCKQCTFRSKNRYYLKAHMVIHEDKNEIKWFPCQHCTYKTKLKSELTRHMLKHEDIHKDETKWFYCALCNYKTKRKGDLTKHMVKHKDLCKVEWLRCDKCSHRTKYKSNLKTHMNIHRDKNQIKWFPCKHCTYKTKWKYSLIKHMLIHKDGNDVKWFPCKLCTYKTKWKDNLRKHILIHEDDHRDENEIIWFPCQHCTYKAKLKSELTRHMLKHENIHRDETKWFHCAHCNYKAKRKGNLTKHMVKHKDLCKVEWLRCDKCSHRTKYKSNLKTHMNIHRDKNQIKWFPCKHCTYKTKWKFGLTKHMLIHKDGNDVKWFPCKLCTYKTKWKDNLRRHILIHEDVHRDENVINWFPCQLCTYKSKLKSELTRHMLKHEDIHRDETKWFHCAHCNYKAKRKGDLIKHMVKHKDLGKVEWFRCDKYSHMTKYKKCLKSHMNIHRDENQIKWFSCKHCTYKTKRKDNLRRHILIHEDVHRDENEINWFPCQHCTYKSKLKSELTRHMVKHEDIHRDETKWFHCAHCNYKTKRKGDLTKHMVKHKDLGKVEWFRCDKCSQMTKYKKCLKSHMNIHRDENQIKWFSCKHCTYKTKWKDNLRRHILIHENEINWFPCKHCTYKSKWKDNLRIHMLMHENISEVEWFQCEQCTYKTHYKPYLRKHMIIHKDEDKIKWFYCPKCDFKAKRKFKITSHMLKHSEVLIQCAQCVYKTNYKNNLKRHIMTMHKDEQFQLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -