Aaen046115.1
Basic Information
- Insect
- Aspidapion aeneum
- Gene Symbol
- -
- Assembly
- GCA_963576565.1
- Location
- OY755043.1:11027430-11031745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0024 0.3 13.7 1.4 1 23 9 31 9 31 0.96 2 19 3.1e-06 0.00038 22.8 0.2 2 23 66 87 65 87 0.96 3 19 0.0018 0.22 14.1 5.6 1 23 93 116 93 116 0.96 4 19 1.9e-05 0.0024 20.3 0.2 1 23 127 150 127 150 0.96 5 19 1.9e-05 0.0024 20.3 0.3 2 23 162 184 161 184 0.95 6 19 0.034 4.2 10.1 0.8 3 23 226 245 225 245 0.98 7 19 7.9 9.7e+02 2.6 0.1 5 23 250 268 247 268 0.92 8 19 0.015 1.8 11.2 0.4 1 23 273 295 273 295 0.94 9 19 1.6e-06 0.0002 23.7 0.6 3 23 331 351 329 351 0.96 10 19 0.00027 0.034 16.7 5.2 1 23 357 380 357 380 0.98 11 19 2.1e-05 0.0026 20.2 0.7 1 23 391 414 391 414 0.95 12 19 0.064 7.9 9.2 1.2 3 23 468 487 467 487 0.98 13 19 0.76 93 5.8 0.2 5 23 492 510 489 510 0.93 14 19 0.0087 1.1 11.9 1.1 1 23 515 537 515 537 0.95 15 19 3e-05 0.0037 19.7 0.2 2 23 572 593 571 593 0.96 16 19 0.00042 0.051 16.1 4.7 1 23 599 622 599 622 0.97 17 19 1e-05 0.0013 21.1 0.2 1 23 633 656 633 656 0.96 18 19 0.014 1.8 11.2 1.3 2 23 668 690 667 690 0.94 19 19 0.00073 0.09 15.3 6.3 1 23 699 722 699 722 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTTCACGAAGAAGTACACTATGACTGTGATGTGTGTCACAAGGCCTACAAGACCGTGTACGAATTGGTTGTGCACAAGTATAAACATACTCGTAGTTATGACTGTCCATTTTGCGAATTAACCATAAATTATAAATCCAGAAACTCTATTATATGTCATATCAAACGACACAATGCCGAGTTTAAAGTAACCTGCGAGGATTGCGGCAAGGGTTTTTTTAGTCAGGCCAATCTTAAACGGCACCGAGCAATACATGAAAGTCTTCCTAAATATGAATGTGAGATCTGTCATAAGAAATTTACCGGTGAACATTACTTGACCAGTCACAAAAGATTTAACCACAAAATGGAATTGTTCGGGACTGATCAAAAATATCAGTGTGAAATTTGCGGacgaaattttaattttgaggTAGCTCTGAAACGACATTTGCAACTTATTCATAAAACTGGTGATAAAGAACATTTTAAACCCGTACAATGTGACTTGTGCAAGAAAGTTGTATCTAGCAGAGAAAACTTACGGCGGCACATGCAAGCAGTTCATACAAGTGCCGAAGATAAAAAGAAgAAAGTAATCAAATACATAATCAAGCCACCTCCTAAACTCAAACGCACAGTCAAGAAAAAAGCTCTTCAGGCCACAGACGCTGAAGTAGGAAAAGAACTTTGCAATATCTGTGGAAAACAATTTCTTCAAACCGATCTAGATACtcatgtaaaaaaacacaaattttgCATACAATGCGAAACAACATATGAAAACGAAAAGGTCTATAACGAGCATATGGCTATTCACGAAAAAGTACAGTATGACTGTGATGTGTGTCACGAAGCCTACGAGACCGCATACGAATTGGTTATGCACAAGTATAATCATACTCGTAGTTATGACTGTCCGTTTTGCGAATTAAGCATAAATTATAAATCCAAAACTTCTATTATATGTCATATCAAACGACACAATGCCGAGTTCAAAATATTCTGCGAGGATTGCGGCAAGGGTTTTTTTAGTCAGAGCAATCTTAAGCGGCACCGAGAAGTACATGAAAGTCTTCCTAAATATGAATGTGAGATCTGTCATAAGCGATTTACCGTTGAACATTACCTGACCAGTCACAAAAGATCAAATCACAAAAAGGAAATATTTGGGACTGATCAAAAATATCCGTGCGAAATTTGCGGacgaaattttaattttaagggAGCTTTGAAACGACATTTGCACCTTATTCATAAAAGTGGTGAGAAAGAACATTTTAAACCCGTAGAATGTAACTTGAAGGTAGTCAAATACATAATCAAGAAGAGACCTTCAAAAGTCAAAGGCACAGTCAAGTCAAGAGTCAAGAACAAATCTCTTAAGGTCAAAGACGCTGACGAAGGAAAAGGACTTTGCAACATCTGTGGAAAACTATTTTTGAGAACCTATCTAAATACtcatgtaaaaaaacacaaattttgcataaaatgtGAAACAACATATGAAAACGAAAAGGCTTATAACGAGCATATGGCTATTCACGAAGAAGTACACTATGACTGTGATGTGTGTCACAGGGCCTACAAGACCGTGTACGAATTGGTAGTGCACAAGTATAATCATACTCGTAGTTATGACTGTCCGTTTTGCGAATTAAACATAAATTATAAATCCAAAACTTCTATTATATGTCATATCAAACGACACAATGGCGAGTACAAAGTAACCTGCGAGGATTGCGGGAAAGGTTTTTTTAGTCAAGCCTATCTTAAGCAGCACCGAGAAATACATGAAAATCTTCCTAAATATGAATGTGAGATTTGTCACAAGAGATTTACCGTTGAACATTACCTGACCAGTCATAAAAGATTAAATCACAAAAAGGAAATATTCGGTATTGATCAAAAATATCAGTGCGAAATTTGCGGacgaaattttaattttgcgGTTGCTTTGAAACGACATTTGCAACTTATTCATAAAAGTGGTGATAAAGAACATTTTAAACCGGTAGAATGTACCTTGTGCAAGAAAGTTTTGTCTTGCAGAGTAAACTTACGGCGGCACATGCAAGCTGTTCATACAAGTGCCGAAGACAAAAAGAAATTTCAGTGTGATTTGTGTGGTAGTTCTTTTTTTAGATCTCATCATTTAAAACGACACAAGAAAAATGTACACAAActtattgtttaa
- Protein Sequence
- MAVHEEVHYDCDVCHKAYKTVYELVVHKYKHTRSYDCPFCELTINYKSRNSIICHIKRHNAEFKVTCEDCGKGFFSQANLKRHRAIHESLPKYECEICHKKFTGEHYLTSHKRFNHKMELFGTDQKYQCEICGRNFNFEVALKRHLQLIHKTGDKEHFKPVQCDLCKKVVSSRENLRRHMQAVHTSAEDKKKKVIKYIIKPPPKLKRTVKKKALQATDAEVGKELCNICGKQFLQTDLDTHVKKHKFCIQCETTYENEKVYNEHMAIHEKVQYDCDVCHEAYETAYELVMHKYNHTRSYDCPFCELSINYKSKTSIICHIKRHNAEFKIFCEDCGKGFFSQSNLKRHREVHESLPKYECEICHKRFTVEHYLTSHKRSNHKKEIFGTDQKYPCEICGRNFNFKGALKRHLHLIHKSGEKEHFKPVECNLKVVKYIIKKRPSKVKGTVKSRVKNKSLKVKDADEGKGLCNICGKLFLRTYLNTHVKKHKFCIKCETTYENEKAYNEHMAIHEEVHYDCDVCHRAYKTVYELVVHKYNHTRSYDCPFCELNINYKSKTSIICHIKRHNGEYKVTCEDCGKGFFSQAYLKQHREIHENLPKYECEICHKRFTVEHYLTSHKRLNHKKEIFGIDQKYQCEICGRNFNFAVALKRHLQLIHKSGDKEHFKPVECTLCKKVLSCRVNLRRHMQAVHTSAEDKKKFQCDLCGSSFFRSHHLKRHKKNVHKLIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -