Basic Information

Gene Symbol
retn
Assembly
GCA_963576565.1
Location
OY755038.1:169352167-169368535[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.9e-20 3.9e-16 61.3 0.0 16 89 25 96 16 96 0.92
2 2 0.89 8.8e+03 -0.8 0.0 4 37 197 244 194 256 0.59

Sequence Information

Coding Sequence
ATGCGTGCCCGGGCTCCAACGAAATCGAGCAATTCTACTACGCAAGACAGACGTCTGCTGCAGTACAGCACGTTCGgaACTCCGATAAATAGACTGCCCATAATGGCCAAATCAGTTTTAGATTTATATGAATTATACAATTTAGTCATTGCTCGTGGAGGATTAGTCGATGTTATAAATAAGAAGCTATGGCAAGAAATTATCAAAGGACTTCACTTACCCTCATCTATCACATCAGCAGCATTTACGTTAAGGACGCAATACATGAAATACCTTTACCCTTATGAATGTGAAAAAAGGAATCTAAGTACACCACAAGAATTACAAGCAGCCATAGATGGAAACAGAAGAGAAGGAAGAAGAAGTAGTTATGGGCAATATGATTCCATGTCAAGATCTCCAAACCCCACCCACCCAATGAACCCCTTGCTTGTTTCGGCGGCGCAACAGCAGCAAATCGCGCAAATGAACAACGCGATCGCGCGAGGGATGAATCCCCTACACAACGGAGTGCACCACCCTAGCCATCCACAGCCGCTGACGCAACCCATGACAAACGGGGGCCCATTCCCTAACTTGGCGCCCAGTGAGTTTGAGGCCAAAATGATGGAATATATGAAGCTGTTTACCAATAAAGATATAAGGTCTACAACTTGTACACCACCAAGACAAAGTGAATTATCTCCACCACCACACAACACCACGTCACCGCTGAACCCATTTGAACTGAATCGTATGACCTTATTTAACTTATATAATAACAATCAACCTTCCATAGAACCTCAAAAAGAACCCATTAACCTTTCGGAACCAACAGCTCCTATAAAAAGAGAACCTGAAAATCAGGGTTCACCACCTCCCAGTAAAAAGCTATTTAAAGAACCTTTAATGGAGGAGGAGGAGGAAGAAGAAGAAGAGATAAGCAGGCGGAAGTCAATGTCACCTTCTTCGCCGATCCATACACCTAGTACacatataaaaattaatagCAGAGgtGATTCCAGAAATGGGGACAATTCCTTAGTAGTAAGCATGGAACTAAACGGAGTTACATATCAAGGAGTTCTTTTTGCACAGAACTCACAGACACCTCGAGCGGCAATGGCTTCCTAA
Protein Sequence
MRARAPTKSSNSTTQDRRLLQYSTFGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRNLSTPQELQAAIDGNRREGRRSSYGQYDSMSRSPNPTHPMNPLLVSAAQQQQIAQMNNAIARGMNPLHNGVHHPSHPQPLTQPMTNGGPFPNLAPSEFEAKMMEYMKLFTNKDIRSTTCTPPRQSELSPPPHNTTSPLNPFELNRMTLFNLYNNNQPSIEPQKEPINLSEPTAPIKREPENQGSPPPSKKLFKEPLMEEEEEEEEEISRRKSMSPSSPIHTPSTHIKINSRGDSRNGDNSLVVSMELNGVTYQGVLFAQNSQTPRAAMAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01128104;
90% Identity
iTF_01128104;
80% Identity
-