Ajap024571.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000040.1:499095-502514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0082 1.3 10.3 4.6 2 23 256 278 256 278 0.91 2 12 0.00033 0.053 14.7 4.7 2 23 339 361 338 361 0.95 3 12 9.5 1.5e+03 0.7 6.5 3 23 449 470 448 470 0.94 4 12 0.0019 0.31 12.3 0.7 1 23 519 542 519 542 0.97 5 12 0.0089 1.4 10.2 0.5 3 23 584 605 582 605 0.93 6 12 1.6e-05 0.0026 18.8 0.2 2 23 629 650 628 650 0.95 7 12 0.006 0.96 10.8 3.6 2 23 691 713 690 713 0.96 8 12 0.081 13 7.2 4.2 3 23 728 749 726 749 0.92 9 12 4.8e-05 0.0077 17.4 0.2 2 23 793 815 793 815 0.96 10 12 0.19 31 6.0 0.9 1 23 888 910 888 910 0.97 11 12 0.00099 0.16 13.2 0.2 2 23 925 947 924 947 0.92 12 12 0.095 15 7.0 1.3 1 23 1019 1042 1019 1042 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCAGCGCTGGCGCAGGAGCTATCCCTAGTATCAAATGAATTATCCAGTGAGAGTTCCAGCCTCGGTGATGATCGGGGCCCACCGAAGAGGCCATGTGAGGAAGCAGACTCGACTAGCCCGAAAAAGCGTAGAAAGCAAACGACACCAGTTCGCGTATCATCAGTACATGGTACAGAGATAGCCGAGTCCGAAGAAGAATACGAAGAGGATAACACCGCTAGTCCACTATGTTTAGCTGAACCTGAATGCATAATACAAGATGATCTTCAAACGATGAATTTTGATGATCCGAGTAGTCTCACTTCCGAAGCACCAATCACTAAACGCCTAGATGAACCTGACGATGGTACTGATGATAACCAAGAAAGGAATCTTGAGGAGGCTCACCTCACTCTGGATCACTCATCAAACGAACCCTCCTTAGCGCACCCAGGTCTTTCCCCACCTTTCCAGCATCACATGAACATTAAGCTCGAGGCACCACCCCCTAACCAAGAATGCGACGTCTTGAATCCAATGAATCCCTTGAACCTCTCAAGTCTAACGGTGAAAAATTTTGCGAGCTCATGGCTTGCAGGACAAAATCAGGAGGCCTCAGATTGGCCACCACAAAATTCTATCCCCAACTTAACAGGCTTACCGTTCCCAGGAGCTCTAGCACAATATCTCCCCCTTCCCGGCTTCAGCTTAGGTGATCCTGGTCAGCTTCCTCGTTTGCCCGTAGGACATACGCCCGTCCGTATCTTCAACCCCGATGCCTACTGCGATCTCTGCAATAAGGAGTTCTGCAACAAGTACTTCCTCAAGACTCACAAGGCTAATAAACATGGTATCTACGTTGATGGTCAAATTACGAATGCGGACAACGGCAATCATTTTCCAAATCTGCTGAATCTACCGAATGCCCAAAATCAATCCAATGCAGAAAACCTAGCATTCCAAATGAACAATAAAGCTGAAGCACCACTGCTGCCAGCTTTACTGAAACTGGAAGGCCCTCCTCAGATTCCCTGCGACATCTGTCACAAACGTTACAAAAATGAGGAGTCATTGAGGAGGCACAAGCAAAGGTGTCATGTAGAGGGTCATCCACAACTTCCTGACCCCCACGGAGCTAGAGACTACAATTCTGCTTCAGGGAATGCCGATAAGGACTTGTCACGCAGTCCCAGTGCGATGGAGTCACTCTTCAGACAGGAATTTGGAACAGAGCAGGAGGACAGTAAGTTCATGCCACCACCAAGACACCTGTCACCACAAGCCAGCCAAGAAGCAAGAGAGTCCGGCTTCAGTATCGAGAGACTTAAGCGACTAGGTGTCCTGAACGTTGACGCCTTCTGTGAGATCTGCTGCAAGGAATACTGCAACAAATGGTTCCTTCAAACGCACAAGTTGAAGCGACATGGGATTCTCATCCAAGACCATGAAAAATCACCGAATAATCCTGGTGCTGCTGCAACGTGGCATCAAATTCAAACCAGCCCTCTCAATCTAATCGTCACGGAAAGCACACCTAGTGGCTCGGAATCCAATGACAAATCTGAAGAGTATGAATGCAAGTCCTGCGGAATTAAGTTTCAAACCGAGGGACTTTACCGAATTCACCAATCAAAGATGCATGAAAGTGATGAAGAGAAGGTGAAGACCGATGATGAGGAGCGCACAGATTCACTATCAGAAGATCTCCAGAAGCTTCAGACCATGATCTTCCAGCTCAATGGTTTAGATTCCAGCAAGACTATCTGCGACATCTGCAATCGTGAATGCGAGAACAGGTTAGCGCTGAAGAGCCACATGGCGCTAGAGCATGGGAACGTACCGGATGAGAGCGAAGCATCACCTGATCAGTTGGAAGGCTCATCTAGCAATTCGCTGCTACCATGTTCACTCTGCAATAAAGAATTCCCGACGAGCGAAAGTCTGAAGCAGCATATGGAGGAGCATATTCTGCAATCGCCGATACCAAAGAACTCCGTAACTCCATCACCTCAAGTAATACCTGCAGCTCCACCCATTCCGCCGCCCCCAGACAAGAAACTATCATCGTTAACACCCACCTCCAGCTATTGCGAAATCTGCAACAAAGAGCTTTGCAACAAGTACTTCATGAAAACTCATATGCAACGAATGCACGGAATCGAAATAGAGAATGGTTCGCAGATCGGTGGAGTGATCTGCAACATCTGCAACAAGGAGCTTTGCAGCAAGTACTTTCTTCGTGTGCACAAACACAACACTCATGGTATAATTGAGGAGGGAACGACGCTGAGCATAAATAAGCAAGAGCCCTTCGATTCACCTGTGGACGATGCAGCACTTAAACCGGATTTGGGAGATCTCAGCCATCGGTACTTCACGCACTTCAACGAAGTCTGTCCGATCTGTAATCGCCGATTCCGGAGTATTAAATGGTTGAAGGCACACCTTCTGAGTGATCACGGTCAACCGGGAATTGACAAATGGCGAGAGCTTGAAGTGCAGTATCAGAACACAAGAAGACCTCTAAGTTCATCCAGCAAGCAGAACTATAATCCCCACCTCAAGATACCAAATGGCTTGGATCTCACCCAAAACGTAAAAGTCGGTGAATATGGAGGTTTGAGAAACCAGGTGCTGTCGACATTATTCGGTAATGAAGAGCAGCAGAGCAAGAACTATAGGTGCTCCTATTGCAGCTTTACAACACCAGTCCTACCGTTCTTATTCCTTCATGAGAGATCCCATGTAAATAGTCAGGAGATCAATCAGAATACCGAAACTGGTCTGCCCTGTCCTATCTGTTCCCAAATATTTCCCCAACCAGAATTGCTTCATCATCATCTTGTGGTACGTCATCAGTTTTCGAATCTACTATCTCAATATCAGCAGATGGTAGGTAGTCCAAGAAGTGAAGCCCTTGTAGAGCGTCAAGAAGACCAGAATGAACTTCCGCTTAAGGAGGAGAGATCCACTGACAATCAGATGATTTCTCCGGTGCCCCTAAACCTCGAATCCTCGAAAATTCAAAAGGAAGAGCCTAAAGTTGTTCATGTAACGGCGCAAGGTGCATACAAATGCGCTGAATGTGGTTTCGCAACGGCCAATCTCCATAGAATCAAATCACATGTAAAAAAGACTCATAAAGCATGGGGTGATGCAACCGAAAGCGTTATCACGGAGCTCACCAGAACACTTCGAGAAGTGGCCAATAAGCATAAAGTACCTGCCAGCTTTGCAATGCCACAGGATATGAACTCCAATCCAGATGCCACCGTCATGCAGCCGTTTATCCTTGAAGAACGGAACTTCACGTTTGGAGATGAGTCCAGTGATCAGCGTTTCGCACCAGCTCTTGTCTATCTACCGGTACGTACACGGGTCAACAGTGTCCTGACTGCTTCCTTTACACTTAGTCCAGCCTCGATAATCTCATAG
- Protein Sequence
- MASALAQELSLVSNELSSESSSLGDDRGPPKRPCEEADSTSPKKRRKQTTPVRVSSVHGTEIAESEEEYEEDNTASPLCLAEPECIIQDDLQTMNFDDPSSLTSEAPITKRLDEPDDGTDDNQERNLEEAHLTLDHSSNEPSLAHPGLSPPFQHHMNIKLEAPPPNQECDVLNPMNPLNLSSLTVKNFASSWLAGQNQEASDWPPQNSIPNLTGLPFPGALAQYLPLPGFSLGDPGQLPRLPVGHTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDGQITNADNGNHFPNLLNLPNAQNQSNAENLAFQMNNKAEAPLLPALLKLEGPPQIPCDICHKRYKNEESLRRHKQRCHVEGHPQLPDPHGARDYNSASGNADKDLSRSPSAMESLFRQEFGTEQEDSKFMPPPRHLSPQASQEARESGFSIERLKRLGVLNVDAFCEICCKEYCNKWFLQTHKLKRHGILIQDHEKSPNNPGAAATWHQIQTSPLNLIVTESTPSGSESNDKSEEYECKSCGIKFQTEGLYRIHQSKMHESDEEKVKTDDEERTDSLSEDLQKLQTMIFQLNGLDSSKTICDICNRECENRLALKSHMALEHGNVPDESEASPDQLEGSSSNSLLPCSLCNKEFPTSESLKQHMEEHILQSPIPKNSVTPSPQVIPAAPPIPPPPDKKLSSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGSQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGTTLSINKQEPFDSPVDDAALKPDLGDLSHRYFTHFNEVCPICNRRFRSIKWLKAHLLSDHGQPGIDKWRELEVQYQNTRRPLSSSSKQNYNPHLKIPNGLDLTQNVKVGEYGGLRNQVLSTLFGNEEQQSKNYRCSYCSFTTPVLPFLFLHERSHVNSQEINQNTETGLPCPICSQIFPQPELLHHHLVVRHQFSNLLSQYQQMVGSPRSEALVERQEDQNELPLKEERSTDNQMISPVPLNLESSKIQKEEPKVVHVTAQGAYKCAECGFATANLHRIKSHVKKTHKAWGDATESVITELTRTLREVANKHKVPASFAMPQDMNSNPDATVMQPFILEERNFTFGDESSDQRFAPALVYLPVRTRVNSVLTASFTLSPASIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -