Basic Information

Insect: Asobara japonica
Gene Symbol: -
Assembly: GCA_017141405.1
Location: JADHZF010000105.1:258797-262388[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.6 1.1e+03 1.2 0.5 1 12 8 19 8 24 0.83

2 16 0.72 1.1e+02 4.2 0.1 3 23 108 129 106 129 0.93

3 16 0.00079 0.13 13.5 0.4 2 23 134 156 133 156 0.89

4 16 0.27 44 5.5 0.5 2 23 215 236 214 236 0.94

5 16 0.23 37 5.8 5.1 2 23 242 264 241 264 0.93

6 16 0.068 11 7.5 0.1 3 20 276 293 274 294 0.94

7 16 0.00025 0.04 15.1 1.3 1 23 300 323 300 323 0.98

8 16 2.6e-05 0.0041 18.2 0.5 1 23 336 358 336 358 0.99

9 16 1.7 2.8e+02 3.0 0.2 3 23 368 389 366 389 0.89

10 16 6.5e-05 0.01 16.9 1.1 2 23 396 417 396 417 0.98

11 16 0.24 38 5.7 0.1 2 23 421 443 420 443 0.90

12 16 3e-05 0.0049 18.0 1.1 1 23 453 475 453 475 0.97

13 16 0.15 25 6.3 1.7 1 23 481 503 481 503 0.94

14 16 5.7e-05 0.0092 17.1 2.1 1 23 508 530 508 530 0.98

15 16 0.00011 0.017 16.3 6.5 1 23 538 560 538 560 0.98

16 16 0.00023 0.037 15.2 1.4 1 23 566 589 566 589 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.6	1.1e+03	1.2	0.5	1	12	8	19	8	24	0.83
2	16	0.72	1.1e+02	4.2	0.1	3	23	108	129	106	129	0.93
3	16	0.00079	0.13	13.5	0.4	2	23	134	156	133	156	0.89
4	16	0.27	44	5.5	0.5	2	23	215	236	214	236	0.94
5	16	0.23	37	5.8	5.1	2	23	242	264	241	264	0.93
6	16	0.068	11	7.5	0.1	3	20	276	293	274	294	0.94
7	16	0.00025	0.04	15.1	1.3	1	23	300	323	300	323	0.98
8	16	2.6e-05	0.0041	18.2	0.5	1	23	336	358	336	358	0.99
9	16	1.7	2.8e+02	3.0	0.2	3	23	368	389	366	389	0.89
10	16	6.5e-05	0.01	16.9	1.1	2	23	396	417	396	417	0.98
11	16	0.24	38	5.7	0.1	2	23	421	443	420	443	0.90
12	16	3e-05	0.0049	18.0	1.1	1	23	453	475	453	475	0.97
13	16	0.15	25	6.3	1.7	1	23	481	503	481	503	0.94
14	16	5.7e-05	0.0092	17.1	2.1	1	23	508	530	508	530	0.98
15	16	0.00011	0.017	16.3	6.5	1	23	538	560	538	560	0.98
16	16	0.00023	0.037	15.2	1.4	1	23	566	589	566	589	0.97

Sequence Information

Coding Sequence: ATGGATCCAATAGCAGAAGATTACACATGTAGATTGTGTACAAAACGAGGAAGAGATTATCATGAGATTTTCACACCTGATTCCTCCTCTATCTCGGATAAAATCAATAACTGCTTACCAATAGTGATCAATCGAGGCGATGGGCTGCCCTCCCACATTTGTCCAGCGTGTCTCACAGCCTTGAACACCAGCGACACTCTAAGAGCCCAATCTCTCGTAGCTGATGAATTTTTACGCCAACAATTGACCGTAGTTGTCATAAAACAGGAGGAGGACATCAGTGACAATGAGACGAAAAAAGAAATTCCTGAAAGCATCTTCTGCGGAATTTGCGAGATCTATTTTGACGATATAAACAGCTTTGACGATCACATGGAACAATTTCATGCATCCGAATGGATTTGTAATTTATGTAATGAAAACTTCAAGACATCGGATGCACTATTGCAGCATAAATATTTGAATCATTACGATAGTGTGGATAATGTTGATCATGTTGAGAAGACAGAGGATGTTCAGAATACGGATAGTATTGAAAATACAAATGATGTTGAAGATCGACAGGACTCGGATTTTTCCGAAGATCTGTCTGAAAAAGAAGAGGAACTCGTGGGCTGTGGAACTACTGTAGAAGCACCTAGTCCTTGCAGTATTTGCGAGGTGACGACGAAGACTGAACAACAGATGGTTATGCACAAGAAGTTTCATGAGCCTCGATCAATGTACTGCTCCCACTGCTTCCGATCGTTTCCATCTCCATTTGAACTCTTTTGTCATAAGAAAAAAGCTCATAAAATGTTCATGGGCCAGATGATGAAGTGGTTCTGCGAAGAATGCGAGAGATTCAGTGCTAATCCGAGATTTTTGAAGAGGCATGTGGAGTGTAAAAAAATTAAATACAAGTGTAAATATTGCGGTGCGGAGTTCCTTAAACCGAGGCAGTTAATCACGCATCAAAAGAAAAATCACCTGGAAAAAACAATGAATGACGCCGACTTCCAAAAATACAAGTGTGAGACCTGTGATAAAGTTTACATCGACAAAATCACCTTCATGGGCCATGTCCGGACCCATCGAGTGAGACTCGAGAGGAAGTATGGCTGCTCCAAGTGCGAAGGAAACTTTCTGAGTTTGACGAAATTGCGAGCTCACATGGACGACGTTCACGTCAAGAGACGGGATCGACAATGCGATCTGTGTGACAAAGCCTTCACCAGCGATCGCAGTTTGATGGAACATCGCAAAAGACACAAACTTCAAACTTGTCAAGAATGTGGAGAGCTATTTGAAAGTATACGAATTCTCAATAAGCATCTACTAGCCGTTCACAATATAGCAATACCTGCTACAGGGAAATTTATCTGCAAAGAGTGTGGCAAGAGATTTATGAAATTACGTCTTTTGACGGACCACAGGAATATTCACTCGGGAAGACGACCATACATCTGTGAAATCTGTAAAGGAACTTTCAGAACATATGCAGCGCGATGGTGTCACATGCAGAAACACAAAAATGACGGGTATTATTGCGATCATTGCAAGGGGAGGTTTTCCACGAAAGGGCTCGTAAGACGACACATGATAATTCACATGTCCCCAGACCACTGGAAATTTTGCTGTACAATTTGTCCCCAAAAATTCCACAGAAAATCCTACCTAATTACCCACATAAAAAAGCACAACGATACCCGGCCATTTCAGTGTGAAATATGTGAGACCAGATTTGCAACGGACAAATTGTTATTGAAGCATAAAAAACGGCAACACTCTGCGTCTGGGCCGAGGAGGAAACAGGTCAAAAATACGCCGCTAATAGCGCAGCTTAACGTGATATAA
Protein Sequence: MDPIAEDYTCRLCTKRGRDYHEIFTPDSSSISDKINNCLPIVINRGDGLPSHICPACLTALNTSDTLRAQSLVADEFLRQQLTVVVIKQEEDISDNETKKEIPESIFCGICEIYFDDINSFDDHMEQFHASEWICNLCNENFKTSDALLQHKYLNHYDSVDNVDHVEKTEDVQNTDSIENTNDVEDRQDSDFSEDLSEKEEELVGCGTTVEAPSPCSICEVTTKTEQQMVMHKKFHEPRSMYCSHCFRSFPSPFELFCHKKKAHKMFMGQMMKWFCEECERFSANPRFLKRHVECKKIKYKCKYCGAEFLKPRQLITHQKKNHLEKTMNDADFQKYKCETCDKVYIDKITFMGHVRTHRVRLERKYGCSKCEGNFLSLTKLRAHMDDVHVKRRDRQCDLCDKAFTSDRSLMEHRKRHKLQTCQECGELFESIRILNKHLLAVHNIAIPATGKFICKECGKRFMKLRLLTDHRNIHSGRRPYICEICKGTFRTYAARWCHMQKHKNDGYYCDHCKGRFSTKGLVRRHMIIHMSPDHWKFCCTICPQKFHRKSYLITHIKKHNDTRPFQCEICETRFATDKLLLKHKKRQHSASGPRRKQVKNTPLIAQLNVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -