Ajap026059.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- PRDM15
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000105.1:281814-287648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.6 1.1e+03 1.2 0.0 1 17 52 68 52 69 0.88 2 14 0.013 2 9.7 0.8 1 23 106 129 106 129 0.95 3 14 0.00053 0.085 14.1 0.8 2 23 134 156 133 156 0.95 4 14 1.4 2.3e+02 3.3 0.3 2 23 211 232 210 232 0.92 5 14 1.4 2.2e+02 3.3 5.2 2 23 238 260 237 260 0.93 6 14 0.67 1.1e+02 4.3 0.4 3 20 272 289 270 290 0.92 7 14 5.5e-05 0.0088 17.2 1.8 1 23 296 319 296 319 0.98 8 14 4.6e-06 0.00074 20.6 0.2 2 23 333 354 332 354 0.98 9 14 0.093 15 7.0 0.7 3 23 364 385 362 385 0.92 10 14 1.4e-05 0.0023 19.0 5.2 1 23 391 413 391 413 0.98 11 14 0.066 11 7.5 0.1 2 23 417 439 416 439 0.94 12 14 2.6e-06 0.00042 21.3 0.4 1 23 449 471 449 471 0.98 13 14 0.00015 0.025 15.8 0.5 1 23 477 499 477 499 0.97 14 14 0.0012 0.19 13.0 6.8 1 20 504 523 504 526 0.95
Sequence Information
- Coding Sequence
- ATGGATACAATCGCACCCGAAAACACATGTAGATTATGTACAAATCGAGGAAAAGATTATCATGCAATTTTTACGTCCAATTCGTCCTCCATTTCGGATAAAATCAATAATTGTTTACCAATACTGATTAGTGCAGACGATGGGCTGCCATCCCACATTTGCTCCGTATGCCTGACTGCCTTGAACACGAGTGACGCTTTAAGAGCGCAATCCCTCGCATCTGACAAATTTTTACGCGATCAATTAACATCAATTGTCATAAAACAGGAGAGAGACCTCAGTGATAACGAAGCGAAGGATGATACTCTAGAGCGTCACTTCTGCGCAATTTGCGAGGAGAATTTTGACGACATGGAAAGCTTCGACGAGCATATGAAAAAATTACACTCATCCGAATGGGTGTGTAATTTATGTGAGGAAGATTTTAAAACTTCCGATGCATTATTGCAGCACAAACATACGAATCATTATGATACTACTGATGGGGTGGAAGCTGTGTATAATGTTGACAATCCTGACAACACAGATGATGATCAACATTCCGATGCTTCGGTGGATGATTCCGATAAGGATGAAGATTATCGGCCGTCTAAAAGGCCTACGTCAAGTATAAAACGACCAAAGTCAAGTCGCTGTAATATTTGTAAGGCGACGATAGAGACTGAGGAGCTGATGGTTCTGCACAAGAAGTTTCACGAGCCTCGTTCAATGTATTGCTCCCATTGCTTCCACTCGTATCCATCACCATATGAGCTCTTTTGTCACAAGAAAGTTGTCCATAAGATGTTCGTGGACCAGGCAATGAAGTGGTTCTGCGAGCAATGCGAGAGGTTTAGTGCAAATCCAAAATTTTTTGAGAAGCATGCAAAGTGTAAGAGGATTAAGTTCAAGTGCAAGTATTGCACTAGGGAGTACGCAAAGCGAAGGGAGTTGATTGTCCATCAAAAGAAAATTCATTTTGAGCTAACGATGAACGACCCCGAAATTGAGAAGTCCAAATGCCCAGAGTGCGATAAAATTTACATCGACAAAGTCGACTACAGGGTTCATGTTCGGACACATAGAGTGAGACTCGAGAGGAAGTACGGATGCAAAAAGTGCGATGGAAATTTTCTGAGTCTTACCCATTTGAGGGCTCACATGGATGACATTCACGTGAAGAAGAGGGATCATCAATGCGATCTTTGTCACAAAGCATTTACTAGCAATCGGAGTTTGATGGCACACCGTAAAAGACATATACACCAAACTTGTCAAGAATGTGGCGAACTATTCGAAAACATACGAATCCTGAATAAACATCTACTATCTGCTCACAATATAACAACTCAGTCATCAGGGAAATTTGTTTGCAAAGAATGCGACAAAAAATTCGCGAAATTAAGACTTCTGCAGGACCACATTAATATTCATTCTGGAGAACGTCCACATGTTTGTGAAATTTGTGGCGAAACTTTCAGGACATACGCAGCTCGCTGGTCTCATGTGCAGAAACACAAGAATAATGGATTTTACTGTGATTATTGTCAGCGAAAGTTTTCAACGAAAGGCCACGTGAGACGACATCTGACTTGCCACTGTCCCCGCGCACCTATACATATGAACTCTGATAACTTAGTTGATGAATATGTCAACCACGAATACCTGGGACATCCCATGTGA
- Protein Sequence
- MDTIAPENTCRLCTNRGKDYHAIFTSNSSSISDKINNCLPILISADDGLPSHICSVCLTALNTSDALRAQSLASDKFLRDQLTSIVIKQERDLSDNEAKDDTLERHFCAICEENFDDMESFDEHMKKLHSSEWVCNLCEEDFKTSDALLQHKHTNHYDTTDGVEAVYNVDNPDNTDDDQHSDASVDDSDKDEDYRPSKRPTSSIKRPKSSRCNICKATIETEELMVLHKKFHEPRSMYCSHCFHSYPSPYELFCHKKVVHKMFVDQAMKWFCEQCERFSANPKFFEKHAKCKRIKFKCKYCTREYAKRRELIVHQKKIHFELTMNDPEIEKSKCPECDKIYIDKVDYRVHVRTHRVRLERKYGCKKCDGNFLSLTHLRAHMDDIHVKKRDHQCDLCHKAFTSNRSLMAHRKRHIHQTCQECGELFENIRILNKHLLSAHNITTQSSGKFVCKECDKKFAKLRLLQDHINIHSGERPHVCEICGETFRTYAARWSHVQKHKNNGFYCDYCQRKFSTKGHVRRHLTCHCPRAPIHMNSDNLVDEYVNHEYLGHPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -