Ajap026056.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000105.1:263216-269018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.082 13 7.2 2.9 3 23 108 129 106 129 0.95 2 14 0.0019 0.31 12.3 2.0 1 23 133 156 133 156 0.93 3 14 0.0088 1.4 10.2 0.6 3 23 227 248 225 248 0.94 4 14 0.25 40 5.7 0.1 3 19 260 276 258 278 0.93 5 14 0.008 1.3 10.4 7.4 1 23 284 307 284 307 0.98 6 14 2.5e-05 0.004 18.2 1.0 1 23 320 342 320 342 0.98 7 14 0.027 4.3 8.7 0.6 1 23 350 373 350 373 0.92 8 14 0.00011 0.017 16.3 5.7 1 23 379 401 379 401 0.98 9 14 0.0049 0.78 11.0 0.2 2 23 405 427 404 427 0.93 10 14 0.00013 0.02 16.0 2.2 1 21 437 457 437 459 0.94 11 14 0.00027 0.043 15.0 0.1 1 23 465 487 465 487 0.98 12 14 0.0039 0.62 11.4 3.0 1 20 492 511 492 514 0.95 13 14 1.1e-05 0.0017 19.4 4.4 1 23 522 544 522 544 0.97 14 14 0.031 4.9 8.5 1.3 2 23 551 572 550 572 0.94
Sequence Information
- Coding Sequence
- ATGAATTCAACTAGCACCGAAAATGTATGTAGATTATGTACAAATCGAGGAAAAGATTATCACGATATATTCACTTCCGATTCATCCAGCATCTCGGATAAAATCAATAATTGTTTACCAATAGTGATCCATCCAGACGATGGACTACCATCCCATATTTGCTTCTCATGTCTCGTTGCCCTGAACACAAGCGATGCTCTGAGAATAAGAGCTCTGGAGGCAGACCAATTTTTGCGGAAGCAAGTGGCAGCAGTTGTCATCAAACAAGAGCAGGACATCAGTGACAATGAAGGAGAGGAGAAAAATTCTAAAAGCATCTTCTGCAGAATTTGCGAGGTCGACTTCGATGATTCGACCACCTTCCACAATCACATGGAATCATGCCACTCAACCGATTTCACCTGCAGTTTGTGTCAGGAAGATTTTAAAAGTTCTGAAGCTTTATCGCAACACAAGTGCGCAAGTCATTCAGAAAATTGCGATAATGATGAAGATGTGGATAATGTTGAAGAGCAACCTGATTCTCCGTACTCGGTTATATCCGATACAGAGGAGGTGTTCGTTGATTGTGGAAACATTGACAAAAAGCCCAGCATATGCAGCGTTTGTGAGGTGACAATACCAAGTGAAGAGCTGGTGGCTGTACACGAGAAGTTCCATGCACCTAGACCAACATTCTGCTCTCAATGCTATCAAACCTACCCATCGCCTTATGATCTTTTTATTCACAAGCAACAATATCATAAGCGTTTCATTGATCATGCAATGAAGTGGTTCTGTGAGGACTGCGAGAGATTCAGTGCTAATCCAAGATTTTTGACTACACATGCAGAGTGTAAAAAAACTACGTTCAAATGTAAGCATTGTGATGCGCAGTACACGAAACACAGGGAACTGTTTCTGCATCAGAAGAAACAACATTTCGAGCAAACGATGAACGATCCCGATGTTGAGAAGTTCCAATGTAGAACGTGTGACAAAAAGTTCATCGATAAAGCGGATTTTAGAGGTCATGAGCGGATACATCGTTTGAGGATCGAGCGAAGGTACTCGTGCACAAAGTGTGGCGGAACTTTTTTAAGTCGTATGAGGTTGAAAACTCACATGGATGATGTTCATGTTAAAAGAAGAGACCATAAGTGCGATATTTGCAAAAGAGCGTATACTAGCAGGAGGAATTTGATGATACATCATAAAAGACATTTGAAATTAACTTGTCGAGAATGTGGAGAACTATTCGGAAGTACGAAAATGCTTAATAAGCATCTACTCGCTCTTCACAATATAACAGCGCTACCCGTTGGGAACTTCGCTTGCAAAGAATGTGGGAGGAAATTTGTGAAATCACGACTCCTGGAGGACCACATGAATTGCCACTCTGGTAATCGACCCTATGTTTGTGAAATCTGCAATGAAACTTTCAGGACATATGCAGCGCGATGGGGTCACATTCAGAAACACAAGAATGAGAAGTTTGTTTGTGAGCATTGCAATGGACAGTTTGGATCTAAGAATCTGCTGAGACGACACATGGCTTGTCACCTGTCACCCGAGAATTGGCGATTCGCCTGCAAGATTTGTGAACAAAGATTTCATAGAAAATCGTATCTGGAAACCCATATGAAAAAACACAATGATACCCGCCCATTTCTGTGTGTAATTTGTGACTCCAGATATTTAACTGAAAGACTGCTTAAAAAACATCAACGCCGACATTCTCAACCTCTGTTCAAAAGAATACAGAGTAATGCTTCGGAGACTGCCTAA
- Protein Sequence
- MNSTSTENVCRLCTNRGKDYHDIFTSDSSSISDKINNCLPIVIHPDDGLPSHICFSCLVALNTSDALRIRALEADQFLRKQVAAVVIKQEQDISDNEGEEKNSKSIFCRICEVDFDDSTTFHNHMESCHSTDFTCSLCQEDFKSSEALSQHKCASHSENCDNDEDVDNVEEQPDSPYSVISDTEEVFVDCGNIDKKPSICSVCEVTIPSEELVAVHEKFHAPRPTFCSQCYQTYPSPYDLFIHKQQYHKRFIDHAMKWFCEDCERFSANPRFLTTHAECKKTTFKCKHCDAQYTKHRELFLHQKKQHFEQTMNDPDVEKFQCRTCDKKFIDKADFRGHERIHRLRIERRYSCTKCGGTFLSRMRLKTHMDDVHVKRRDHKCDICKRAYTSRRNLMIHHKRHLKLTCRECGELFGSTKMLNKHLLALHNITALPVGNFACKECGRKFVKSRLLEDHMNCHSGNRPYVCEICNETFRTYAARWGHIQKHKNEKFVCEHCNGQFGSKNLLRRHMACHLSPENWRFACKICEQRFHRKSYLETHMKKHNDTRPFLCVICDSRYLTERLLKKHQRRHSQPLFKRIQSNASETA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -