Ajap004460.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- prdm10
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000025.1:2491281-2495893[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2e-07 3.3e-05 24.8 0.2 1 23 538 560 538 560 0.99 2 13 0.00037 0.06 14.6 2.7 1 23 568 591 568 591 0.96 3 13 0.0028 0.45 11.8 0.2 1 23 607 629 607 629 0.95 4 13 0.007 1.1 10.5 4.0 2 23 656 677 655 677 0.96 5 13 0.00059 0.094 13.9 3.8 1 23 703 725 703 725 0.97 6 13 0.0096 1.5 10.1 2.5 2 23 734 755 733 755 0.96 7 13 0.031 5 8.5 2.3 1 23 762 784 762 784 0.98 8 13 0.00029 0.047 14.9 4.0 1 23 791 813 791 814 0.96 9 13 0.0033 0.52 11.6 2.8 1 23 819 841 819 841 0.98 10 13 5.5e-05 0.0088 17.2 4.4 1 23 847 870 847 870 0.96 11 13 0.0015 0.24 12.6 1.7 1 23 925 948 925 948 0.97 12 13 0.00012 0.019 16.1 2.0 1 23 970 993 970 993 0.95 13 13 0.0025 0.41 11.9 3.9 3 23 1027 1048 1027 1048 0.98
Sequence Information
- Coding Sequence
- ATGGAGAATAGGGGCCCTCACGAGGGGGCCCCTATTGGTGCCCTGGAGATGCCTCTGCTGGACAAGCCACGTGACTTTCCCGAAATCTGGACCAATTCCACAAATTGCCTAGATTCGCGTAAAAATTCAAATCGTCTATTCCTCCTCACCGTTGAATACGTCGATGACCCTTCGAAAATGTATCCCTATGAGCAGGTGACATTTTCCCCACGTGCAACATCACCTCTCTCCGATTTTGAGCATCGTGTGAGTCCACTGGATCCCAATATGAGCTCAACAGCAAGATACTCACCTACTCCAGTCCAATTGCCCTCCTTGCCATTCCAAAATTCCGTCGTTGTACTACAAAATCCCCCCTCACCCCTTATCATTCCAACTGAGACCAATCAGCGTGCAAATATCAACTTCATTGAGAGCCAGAGTCCTAGGAATATTGCACAAGGCCCAGCTGATGCTGTCCCAGATTTTGCTAATGAAGAGCCCGAGCAGAGCATTTCTAATGATGTTAATGGAGAATTGATTCTGATGCAGGAGACACCCGTGGAACTGGAAAGCTCCCCAGCCCCATTAATGCTCTCCGGTCTCTCGGGCCTCCCCGGCTCCGAGTTCGCCCTGGCTCGTGATTTCCTAGTGATGAATGACGACCAGCTGACCATCATAAACTCCCTAAGACCACCATCCACAGAATCAGCAGCTGTTGTGCCAGAGTTGTCTACACTTGGCAACAAGTCCCAAATCCTTGCCTACTCCACAGACCTTCCAAACAATTCCCCTCCCTCCCCCTTACCCCAAATCGCTCAAGTCTCTCACATTACATCATCCAATTGCACAAAAAGTCAAATAACCGACGAGAAAGCATTGTGGTGCGACCCTTACGATCCAATTGACACGCCAATTAAGAGCGAATGGACCTGTCACAAGGTGCGAACCATAGCAGACCAACCGGTACCATCTCGGGCTGTGGCAACGCTTCCCGGATCCTACCTCACCCTGACCAAGCTCAACAACACAACTGAAGAAGTATACGGTGTGTTTGCAAAGCGAAACATTTGCAAACGTACACAGTTCGGTCCAATCGAGGGAGTTCTCTGCGAATACGATGGCAAAGGCTTTCCCCCTGAAGCCCTGCCCCTTCTCTACGAGACAACAACTGGAGAGTTGTTAAAGATCGATGTTTCCAATGAGAATTCATCCAACTGGATGCGCTTCGTTCGTCCAGCACTCAGCGCAAAGGAGCAAAATCTCATGATTGTCCAGCACAAGGACGGTGTAATATTTCTTACAACTCGCAATATCTTTCCACGTGAAGAATTGCGCGCTGGGCCAAGTGCAGATTATGCAGCACGAAGGACCCTTACAATTTTGGAGGAGGCACCTGTCACTCAGCAGTTCAACACTGGAGATCTTGAGACATTCTCCTACATTGACTCACACCCAACCTCTGAACCAGATGCCTTTCATTCCTTACATCCTTCTGTTACAATTTCATTGAAGAATGAGGACCAGGTTGAGACTCAGGACAGCAAGAGGCAGCTTAAGAAGCAAGTGAAGTATCCTGAGATATCGAGAACTAAGTCTAAACTCCTGAAGACGATGGACGAGCAGAGCCTTTACAGCTGCCCTCAGTGTCCAAGGGGCTTCCCAAGGAATGATTCTTTGATGAAACACATGCTTACTCATACGGACGCTCAGGCACGTAGGTACGACTGCGGCACTTGTGGCGAAACTTTTCTCCACGCCCACAATCTCACCAGACACCTCAAAATATTTCATAGCAATGATGCAAAGGACAAGGAGAACTCGCGCAAAAATTCCGAGTACAAGTGTCCAAAGTGTCCCCTGGTCTTCCTCAAATCCTCGCTTCTAACAATTCACAGTGATGTACATAGAGAAAATAATAAAAATAATAGGTCCAATGAGAATAACAACGAAACCGAAGACAACTTGAAGGTGTGGAAAAGTTTGCGCTGCCCTCAGTGCGATCATAACTCAAAAACTCACTCTGAACTACTGAAACATGTATCCAAACATGGACACAAATCAAGCAAATCACAGCAGAAGCTTACGAAAAATTTGAAAAGCCCAGTATTATCGCCTTTATCATCTCACAAATGCAACATGTGCTACAAACGTTTTGCTACTAAAGTTCGTCTGCAACAACACTACTTGGTCCATGGCCCAGAGTTTCAAAAGCCACTGCCATGCAATGTGTGTTTCAAACGCTTTATGAACAACTCAGCACTGTCCTGCCATTTGAAAACTCATCGCGAGGACAAGCAGATATTTGAGTGTCCCATGTGTCGCATGTTATTCCATCAGGTTCTCCACCTGAAAGATCACATCGAAACACACAAAAATGAGGACAAGAGCTTCACGTGTCCCCATTGTCCCCGAAATTTTACCAAGTATTCAGTGATAAGAAAACACATAAGGGCACATCACTGCGAGCGTAAGCACAAATGTCAGTTTTGTGCCAAGCGCTTTCCCACAATTGACAAACTACGAATGCATCTTCTGAGACACTCGGATCATCGACAGTTCCACTGTGCCAATTGCGATAAGCAGTTCAAACGCAAGGATAAGCTAAAAGAGCACATGACAAGAATGCATAATTCAGCAAGAATGGAGAGCATGAAGGAGCGAAAAGTTAAAAATGAGAATGATAATGACCACCTTAATAATACCACCGCTGATTTACTCCAAATTAATCCGAATAATTTGCCAAGAAAATTCATTCCTAAAGTGAGTCCTACGGATTACAACAGATTCGTCTACAAGTGTCATCAGTGTCTTGTAGGATTCAAGCGGCGGGGAATGCTGGTGAACCATCTGGCTAAGCGTCATCCTGAAGTTTCACCAGATTCTATACCCGAATTAAATCTTCCAATTTTGAGGCAGACACACGATTACTATTGCCAATACTGCGATAAGGTTTACAAGAGTAGCAGCAAACGAAAAGCGCACATTGTGAAGAATCATCCTGGTGCAGCATTGCCCCCCAGCAATCGTCAGAAAGAGATGTTGGGTGAGCTGACCTACAGTCAGGCAGCGGGAAGTGTAACAACAACACCTCAAGGCTGCAAATGGTGTCACAAGCAGTATGCAAGTAAAGCAAAATTGTTACAGCATCAGAGAAAGAAACATTCTACACTGATGGAACCTGCTGATCAAGTGCCCAGACCAAGGAATCGTGCACAAGTCCAGAGTCAGATGCTTCACGATCCCCTGGGGCACAGTCTCATTGAGAACAACTTTGAGCTGATTGGAATAGCTTCGGTTTGTGATATGAATGAGCTGAGGGTGAAACCTAGAATGGTTAGGGTCAGTGATATTGATACGCTGGATGGCCAGGGTGGAAGTGATCCAGTTATCGATCAGCAATTTGTCCGTATGCGAGACATACGCTGA
- Protein Sequence
- MENRGPHEGAPIGALEMPLLDKPRDFPEIWTNSTNCLDSRKNSNRLFLLTVEYVDDPSKMYPYEQVTFSPRATSPLSDFEHRVSPLDPNMSSTARYSPTPVQLPSLPFQNSVVVLQNPPSPLIIPTETNQRANINFIESQSPRNIAQGPADAVPDFANEEPEQSISNDVNGELILMQETPVELESSPAPLMLSGLSGLPGSEFALARDFLVMNDDQLTIINSLRPPSTESAAVVPELSTLGNKSQILAYSTDLPNNSPPSPLPQIAQVSHITSSNCTKSQITDEKALWCDPYDPIDTPIKSEWTCHKVRTIADQPVPSRAVATLPGSYLTLTKLNNTTEEVYGVFAKRNICKRTQFGPIEGVLCEYDGKGFPPEALPLLYETTTGELLKIDVSNENSSNWMRFVRPALSAKEQNLMIVQHKDGVIFLTTRNIFPREELRAGPSADYAARRTLTILEEAPVTQQFNTGDLETFSYIDSHPTSEPDAFHSLHPSVTISLKNEDQVETQDSKRQLKKQVKYPEISRTKSKLLKTMDEQSLYSCPQCPRGFPRNDSLMKHMLTHTDAQARRYDCGTCGETFLHAHNLTRHLKIFHSNDAKDKENSRKNSEYKCPKCPLVFLKSSLLTIHSDVHRENNKNNRSNENNNETEDNLKVWKSLRCPQCDHNSKTHSELLKHVSKHGHKSSKSQQKLTKNLKSPVLSPLSSHKCNMCYKRFATKVRLQQHYLVHGPEFQKPLPCNVCFKRFMNNSALSCHLKTHREDKQIFECPMCRMLFHQVLHLKDHIETHKNEDKSFTCPHCPRNFTKYSVIRKHIRAHHCERKHKCQFCAKRFPTIDKLRMHLLRHSDHRQFHCANCDKQFKRKDKLKEHMTRMHNSARMESMKERKVKNENDNDHLNNTTADLLQINPNNLPRKFIPKVSPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPEVSPDSIPELNLPILRQTHDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRQKEMLGELTYSQAAGSVTTTPQGCKWCHKQYASKAKLLQHQRKKHSTLMEPADQVPRPRNRAQVQSQMLHDPLGHSLIENNFELIGIASVCDMNELRVKPRMVRVSDIDTLDGQGGSDPVIDQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -