Ajap001589.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- gtf3a
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000046.1:404922-409716[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2 1.9e+02 3.5 0.3 3 23 711 731 709 731 0.95 2 17 0.072 12 7.4 0.3 1 20 737 756 737 758 0.92 3 17 1.8 2.8e+02 3.0 1.1 2 23 764 785 763 785 0.95 4 17 6.5e-05 0.01 16.9 1.2 3 23 794 815 793 815 0.98 5 17 0.0031 0.49 11.7 2.1 1 23 822 845 822 845 0.95 6 17 9.7e-05 0.015 16.4 0.8 1 23 851 874 851 874 0.94 7 17 0.056 8.9 7.7 1.0 2 23 882 902 882 902 0.96 8 17 5e-07 8e-05 23.6 2.3 2 23 908 929 907 929 0.97 9 17 1.8e-06 0.00028 21.9 0.2 1 23 935 957 935 957 0.99 10 17 0.0034 0.55 11.5 2.8 2 23 969 991 968 991 0.95 11 17 0.26 42 5.6 0.9 1 23 997 1020 997 1020 0.92 12 17 0.023 3.6 8.9 2.9 2 23 1042 1064 1041 1064 0.95 13 17 0.00014 0.023 15.9 0.5 2 23 1071 1093 1070 1093 0.96 14 17 3.2e-05 0.0051 17.9 1.7 2 23 1101 1122 1100 1122 0.97 15 17 0.0014 0.22 12.8 2.4 1 23 1128 1151 1128 1151 0.96 16 17 0.26 41 5.6 3.2 2 23 1158 1179 1157 1179 0.96 17 17 0.0085 1.4 10.3 2.1 1 23 1185 1207 1185 1207 0.98
Sequence Information
- Coding Sequence
- ATGAGCGAAAAAAGGAGCATGGTATTTAGAGGTCCCCGAAATCGCAATGACTCCAAGGACGAAACTGGAAAGAAATCTGTGTGTTCAGACGATAGTACAGGCCTGACAAAATTAAAAGAAAACGATAAAAAATGTTGGAAAAGTAATGAGGAGTCAGACTCTCGAGATGAAAAATCCAGCAAGATGTACACCACGAAGAAGCCACTAGTCCCCCAGGACTCGCAACCGGTCTCGAAGCGTGACCACAGCTATAGCGAGCAATCCCACCCCTCCCCCGACAAGTCTACACCCAACCTAAAGACTCCACCTAAGGCCCCAACAGACCAAAAAAAGTATCTCCCAAAGCTAAAGCTATACCCCTCGGAATCCACCCTCCAAGCCGACTCCCTCAAACTATCACCATGTCGAAAAACGTCAGAAACTCGGGAACAACTGCGCCACTACTGCAGAACATGTGCAGGTCTAAAAATCCCATTGGTCGACATGTTCGGTGAAAAGGGTATTCAAATGCGTTTGACCCAGCAAATAAAGCACTTGGATGAAATCGACGAGCACGATGGTCTCTCCACCCAAATGTGCATGGACTGCATTTGCGACCTAAAAATGTCTTACAAATTCTTCCTCCAAATAAAGAAGGCCCAAGTGAAGCTGAAGTCCCTAATAGCGCCAATTCCCGAGGAGAAATCCCGAGTAATAATTCCGGCAAGTCCAATCAGAAAGGTGATTTCTCCAGTTATAGAATCGGTCAACTTGAGTGATCTCGACCTTCCCTCGACCTTCCCTGAAGATCCTGCAGAAGACCCGATGGCAAGTGATGACGAATCGATCGAAGAATTTGAGCCGGAGCACCCTTACATGGACGATTCAGAGCCTGAGGAGGAAGGAAATGAGGAAGAGCGGCCAAAGACCCCAGAGACCGAGCAAAAACCTCTCCCACCAAGCAAAGACCAACCGGAAGTCGAAGCAAACTGCACCAAGCCCCCAGAAGCAGCCAAGGCAGTTTATCAGTTCGACACAACGTTGAATACTTACATAAAAATGGAGCCAGAAGACTCACCTGCATCTCCAGCTGTTGACTTCAATACTGAGGAAATGGTAACCACAAAAGTGGAGGTAACCAACTTGGATGACTTTCCACCAGTGCAGCAAGAGGACTCCCCACCCCCGCAAAAACAGGACAGTCTGAAAAGAAAAGCTCCAAGCTCAGGCAGGGATTCATTGGACTCGCAAAGTGCGGAGTCAACTGACACCGTGAAAAAACCTGTCAAGGATGCCAAGCTCCAGAAATTGATGTGTCAAAATCCGGTGAGTGTATCGCCATCGAATGAGGAGGGTATCATGTACGTTACAGTAAAAGGAGCAAAACCAAATGAGCTTCTTTTGGTGAAAGTGAAGAAGATGGATAAAAATGAGGATAAGAAAGAGGATAAGAAGGAGGATAAGAAGGAGGAGACTAAATCCATAATTCCAAAGAAGTTCTTGGAAGTGAGGCCCCTGAGAGATAAGGGCCTGAGGCTTTCGCCCCACTCGATTGACATTATAAAAAAAGCTCAAGATTTTAGGGACGCTATAATAGAGGAGCAGATAGAGCTGTATAAGAAAAAACGTGAGCAGATTTTGGGTAGTTCTACAGGCTTGCCAATAATAAAATTTGAGGATGGAGGGGTTCGGTTTATCAATCCGATTCATAGCAAGGAAGGATCGGAGGATGGGAAAGCATCTAGTGATAGTGAGGCGAAAAAACCTAGTGTCCAATTCAGGACTTACAGTTCCTTGGAGACCGATGAAAATCGGCCACTCTCAACGAAAGAGTACATTGCTAAATTTGCCAAGCTCAAGCAGAAGTGGGAGGAGGCCAAGGCCAAGAGAGCTGATCTTCAGAAGGAACTCGAGTCATCCTACAATGAAGGAAATCTTGATAAATTGACGCGAATTTTGGGACAACGGGACAAGAACTTGCTGGAATTTCAGGAATACCTACGACAACGTAAAATCGTGATAACAAAGCTGAGGGACGAGGACATAATTTCTCTGTACGAGCGCAGTAATCGAGAGCACAAGGGAAAATTTCCTGATCTGATAGACGAGGAAGTGCCAATTGATGGTGTAACAGATGTCGATTTTCTCGATTGTGACTACTGCATTGAAACATTTCCATGTCGAGAGCTTCTCGAAGAGCACCTGAAGATTCACGACTTCAAGCTTCACTATTACTGCGAAGACTGTGGCAGTCAATTTCCAAGTAACAAGACCAAACGAGTGCACACGAGCATATGCCTGAAGAAACTCATCTGCAAGTTTTGCGACTTGATGTTGGACTCTAAAGGGAAAAAACGCCAACACGAGCAGAAACATTGTGACGCACTATACGGCCAACTTTGTGACGTATGTGGTGAGAAGTTTAAGCATCAGGGCACCCTGGATCAGCACATAAAAACCCAGCACATGAGCTGGGAGAAGGTCTTTCAATGTCCCAAGTGTCCCAAAAAATTTGCCTTCAAACAAAAATTAAGCTTTCACCTAAAATCAGTTCACACAACAATGCGAGCATTTCTCTGTGAAGATTGTGGTGCTGATTTTAAAAATCCAGCTTCCTTACGCCATCACAGAATAAGGAAACACCAGCCAACGGGTAACAAACGTGAATGTCCAGTTTGCCACAAAATGGTGCCTTTCTACAGTTTGTCAAAGCACATGTACACACATAAGGCTTACAGTATTCAGTGTCCACACTGTGACAAAATGTTCAAGAATACATCGACATTGAAGCAGCACGTGAGAATTCATGAGGACCAGCGCCAGTATCGTTGCGACACATGTGGAGTTGGATTTAATAGGAGAGATGGATTGAGATTGCACATGAGGGTTCATCAGAAGACTGATAGTCGAGCCCTGAAGGAATGTTCCTGTCAAATTTGTTCCGAAAAATTCCCCAATCATTCGATGCTTGTCATCCATAGAAATCGAGTTCACAAGGATGGTAAGCAGTACACGTGCGAGATTTGTAATAGATCGATGCTGTCTACGAGATCCCTCGAGTGGCACATGTCGCACATTCATAATCAAACACCCTCGGGTCTCTCCCAGGAGGACTCGGAGACTTCGTCTGAGAAAAAACGTGTCACTTGCAATCATTGCTTGAAGACTTTCAAAACTGAAATGATTCTGCGTACGCATATCAAGAACACACACATGGAGAAAAATCCGGTGAAGTGTTTGGATTGTGATGAGATGTTCACGTCGGAAGTTAGGCTCAGGCATCATATGATGGTGATTCATAACAGGCTGGAGGGAACTCTTACTTGTCCACATTGTCCAAAGCGATTTGTCAATCAACTCAGACTAAAGACTCACATGATCTCTCACTCCGAGGACAGACCTTTCACTTGTGAGATCTGTGGATTCAACCTCAAGACCAAGATTCAACTCATCAAGCATCATCAGAACAGGCACAGCGATGAGAGACCACTCCAGTGTCGATATTGCCCTTGGAGGTGTAAGCAAGTCTCTGCACTTGTGTGCCATGAGAGGACTCATACCAATGAGCGACCCTATTCGTGCGTCGTTTGCAAACAGAGGTTCAAGTATTTGGGGGACAAGAACAAGCACGAACGCAGGCACGAGAGTTTGGGAGGTTCCGGTTTCAAGAGAATCGTGACTGGTCGAAATGCAAAAAAAGGGCGGGTCGATGGCGAGGCCGAGGGTGAGGAGGAGACCTCAGAGGAGCTGGATCAAGAGCAGGAAATCGAGCTCGAGATGGACCAGGAGTACGAAATAGAAGGCGAATTAGCTGAAGACTATGAGGAGGACGGAGAATTCGAAACTGAAGAGCAAATCGTCAAGTTTGAAGCTCATGAGATTGACCAAGCGTATCAGCAGGAGTATGAGGAAACCTCCAGGGAAGCCTCGGATGCTGCTGAGGTCATCATGAGCATGGAGGATGGCACAGTTTACACGGAAGAAGTAACTGCAGACAATATTGAGGGAGATGAAATAGTCACTGAGGATATGATGACGACCCAGATCCTACAAACGGGCACTGTGGTACATATACAGCAGCAGGATGACGATGGAAAAATTCAGGTCATTCCGGTTATGCTTTCTATCCCGGATTTGACAGAGGGTGGATCAAGTGTCAACTTGGCAACCGCTTCTATCATGTACAGTACTGATTGA
- Protein Sequence
- MSEKRSMVFRGPRNRNDSKDETGKKSVCSDDSTGLTKLKENDKKCWKSNEESDSRDEKSSKMYTTKKPLVPQDSQPVSKRDHSYSEQSHPSPDKSTPNLKTPPKAPTDQKKYLPKLKLYPSESTLQADSLKLSPCRKTSETREQLRHYCRTCAGLKIPLVDMFGEKGIQMRLTQQIKHLDEIDEHDGLSTQMCMDCICDLKMSYKFFLQIKKAQVKLKSLIAPIPEEKSRVIIPASPIRKVISPVIESVNLSDLDLPSTFPEDPAEDPMASDDESIEEFEPEHPYMDDSEPEEEGNEEERPKTPETEQKPLPPSKDQPEVEANCTKPPEAAKAVYQFDTTLNTYIKMEPEDSPASPAVDFNTEEMVTTKVEVTNLDDFPPVQQEDSPPPQKQDSLKRKAPSSGRDSLDSQSAESTDTVKKPVKDAKLQKLMCQNPVSVSPSNEEGIMYVTVKGAKPNELLLVKVKKMDKNEDKKEDKKEDKKEETKSIIPKKFLEVRPLRDKGLRLSPHSIDIIKKAQDFRDAIIEEQIELYKKKREQILGSSTGLPIIKFEDGGVRFINPIHSKEGSEDGKASSDSEAKKPSVQFRTYSSLETDENRPLSTKEYIAKFAKLKQKWEEAKAKRADLQKELESSYNEGNLDKLTRILGQRDKNLLEFQEYLRQRKIVITKLRDEDIISLYERSNREHKGKFPDLIDEEVPIDGVTDVDFLDCDYCIETFPCRELLEEHLKIHDFKLHYYCEDCGSQFPSNKTKRVHTSICLKKLICKFCDLMLDSKGKKRQHEQKHCDALYGQLCDVCGEKFKHQGTLDQHIKTQHMSWEKVFQCPKCPKKFAFKQKLSFHLKSVHTTMRAFLCEDCGADFKNPASLRHHRIRKHQPTGNKRECPVCHKMVPFYSLSKHMYTHKAYSIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKTDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCEICNRSMLSTRSLEWHMSHIHNQTPSGLSQEDSETSSEKKRVTCNHCLKTFKTEMILRTHIKNTHMEKNPVKCLDCDEMFTSEVRLRHHMMVIHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPFTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCVVCKQRFKYLGDKNKHERRHESLGGSGFKRIVTGRNAKKGRVDGEAEGEEETSEELDQEQEIELEMDQEYEIEGELAEDYEEDGEFETEEQIVKFEAHEIDQAYQQEYEETSREASDAAEVIMSMEDGTVYTEEVTADNIEGDEIVTEDMMTTQILQTGTVVHIQQQDDDGKIQVIPVMLSIPDLTEGGSSVNLATASIMYSTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -