Ajap003752.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000012.1:3168936-3176657[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0039 0.63 11.3 0.5 1 21 17 37 17 38 0.95 2 20 0.0056 0.9 10.8 2.3 1 23 46 69 46 69 0.97 3 20 0.76 1.2e+02 4.1 0.7 1 20 83 102 83 104 0.94 4 20 0.017 2.7 9.3 1.5 1 23 112 135 112 135 0.96 5 20 0.008 1.3 10.4 0.1 1 21 162 182 162 183 0.96 6 20 0.00093 0.15 13.3 2.1 1 23 191 214 191 214 0.97 7 20 0.0011 0.18 13.0 0.4 1 21 238 258 238 259 0.97 8 20 0.0081 1.3 10.4 1.1 1 23 267 290 267 290 0.98 9 20 0.0035 0.57 11.5 0.2 1 21 348 368 348 369 0.97 10 20 0.018 2.9 9.3 1.5 1 23 377 400 377 400 0.97 11 20 0.0011 0.18 13.1 0.5 1 21 439 459 439 460 0.97 12 20 0.063 10 7.5 2.7 1 23 468 491 468 491 0.97 13 20 0.006 0.96 10.8 0.6 1 20 515 534 515 536 0.95 14 20 0.0018 0.28 12.4 2.1 1 23 544 567 544 567 0.97 15 20 0.0028 0.45 11.8 0.4 1 20 593 612 593 614 0.95 16 20 0.0012 0.19 12.9 2.3 1 23 622 645 622 645 0.98 17 20 0.0012 0.2 12.9 1.5 1 21 659 679 659 680 0.95 18 20 0.031 5 8.5 2.2 1 23 688 711 688 711 0.97 19 20 0.013 2.1 9.7 1.4 1 21 746 766 746 767 0.95 20 20 0.0016 0.26 12.6 3.6 1 23 775 798 775 798 0.98
Sequence Information
- Coding Sequence
- ATGAAATCACAGGCTATTTTACCCGGCGATTTGGTTTATAAGGAGATCTTCACGTGCACCTATTGCTCAAGCTCATTTATATCGATGATAAGTTTATCGCGACACGTGAGGTCTGGGTGTAATCAAAATTTCAGGTACAAGTGTACTTATTGCGATATGAAATCACAGGAGCAGTACAATGTATTTAGGCATGTGAGAAATCAGCATATTGCTATTTTAGCGGATAATTTGGGTTATCAGGACACCTTTCAATGCGTCAATTGTCCAAGCACATTTTTATCAACGAAAAGCTTATCCAAACACTTGACATATGGGTGTAATAAAAATTTGAGGTACAAGTGTCCTTATTGCGATATGAAATCACAGGACAAGTACAGGGTGTACAAACATGTGAAAATTCAGCACAGTGGTAGGGTTGTTAGTGTCCTAGATATGTACAATAATTATGTATTCATAGCTGATCCACTGTACGTAGGGGAGGGCTTCAAATGTGCCAATTGTCCAAGTGCATTTGTGTCGATGACAGCTTTATCGAGACACCTGAGATATGGATGCAATGTTAACTTCAGGTACAAGTGTTCTTATTGCGATATGAAATCCCAGGATCAGTACAATGTGCGCAGACATGTGAAAAATCAGCATGTGGGTATGGTTATCAGCTGGTTTGATACGCACAATATTTTGCCCGGGGATGTGATTTATGGAGATGTCTACCAGTGCAGCAAATGCCCAAGTTCATTTGTATCGATGATGGGTTTATCGAGACACATGAAATATGGATGTAGAAAAAATTATAGATACAAGTGTGCTTATTGCGATATGACATCACAGGACATGTCCAACGTATACAAACATGTGAAAAGACAGCATCCTGGTACGGAGGTGTGCCTACTAGATCTGCATACAAAATGCACCCGTCGTCCCAGAAAAATCACGGGGAAATACGCAAAAGTTTTTGCAATAAATTATGGAAATGTAATGCACCTTGCAATATTCAATGTTTCAGATATTCTGCTGGGTTATGTGGCTTATGGGGAGCACTTCAAATGCGTCAATTGTCCAAGCACATTTACGTCTATAGTAGGTTTATCCAGACACATGAAATTTGGGTGTGATAAGAGTGTTAGGTACAAGTGCTCTTATTGCGATATGAAAGCACAGGACAAGGACAAGGTGTACAGACATGTGAGACAACAGCATACTGGAAGGGTTATCAGTGTGCTGGATATGGGGAGTCATTGCACATTTTATCCTAGGATAGTTGGCAAGAAGTCGAATCGCCAAAGAGGAGATCCACTTCACCTTGAGGAGACATACAAATGTGCAAATTGTCCAAGTGCATTTGTTAAAAGAACAAGTTTATCAAAACATATGAAATATTGGTGTAATCAGAACTTCAGGTACAAGTGTTCTTACTGCGATATGAAATCCCAGGCGAAATTCAATGTATTCCGCCATGTTAAAAGACAACATAATGGATTTCTTGTTAAGCTGGAAGATCTCTACAATACTTTGACGGATAATTTGGTTTATCAGGAGACCTTCAAGTGCGTTAATTGTCCAAGCTCATTTAAGACAATGATTCATTTAGCGAGACACGTGACATATGGATGTAATCAGAATTGCAGGTATAAGTGCTCTTACTGCGATATGAAATCCCAGGATCAGTATAATGTATACAGGCATGTAAGAAATCAGCATACGGGTATGGTTGTAAGTTTGCTCGATATATTTGATGATTCTATATTCACGGGTGATTTGGTTTATGGCGAGTCCTTCAAGTGCTCAAACTGTCCAAGCTCATTTATATCAAGAACAGGTTTATCCAGGCACGTAACATACGGATGTAATCAAAATTTTAGGTACAAGTGTTCGTATTGCGATATGAAATCCCAGAACAAGTCTAATGCATATAGACATGTTAGAAGCCAGCATATTGCTTTTTTCACTGCCGGTCCACATTATGTGAAGCCCTACAATTGCAAAAACTGTCCGTGCTCATTTGCATCGAGAAAGGGTTTAGCGAAACACGTGAAATATGGTTGCAATCAAAATTTCAGGTACAAATGCTCTTACTGTGATATGAAATCACAGGATACATTCAATGTTTACAGACATGTGAGAAATCAACATATTGGGATGGTTGTTAGTTTGCTAGACATGTACAGATTGGTAAGCACTCATAGATGGCCTCACAGCAGTGAATACCATCAGTGGAATGATGAAACGGGAAAATTTCATTGTGCCAAATGCAATAAGGGATATGGTCGTCGGGACACTATGATAAATCATTATCGTTACGAATGTGGTAAGGGACCACGTTTTAAATGCCCATATTGTCATCTACGCAGCAGAAGAACATCAAGCATTTATCAACACATACGAAAAGTTCACCAAAAAAAGCCAGTGACTACCGTCAAGCTCTTCTGA
- Protein Sequence
- MKSQAILPGDLVYKEIFTCTYCSSSFISMISLSRHVRSGCNQNFRYKCTYCDMKSQEQYNVFRHVRNQHIAILADNLGYQDTFQCVNCPSTFLSTKSLSKHLTYGCNKNLRYKCPYCDMKSQDKYRVYKHVKIQHSGRVVSVLDMYNNYVFIADPLYVGEGFKCANCPSAFVSMTALSRHLRYGCNVNFRYKCSYCDMKSQDQYNVRRHVKNQHVGMVISWFDTHNILPGDVIYGDVYQCSKCPSSFVSMMGLSRHMKYGCRKNYRYKCAYCDMTSQDMSNVYKHVKRQHPGTEVCLLDLHTKCTRRPRKITGKYAKVFAINYGNVMHLAIFNVSDILLGYVAYGEHFKCVNCPSTFTSIVGLSRHMKFGCDKSVRYKCSYCDMKAQDKDKVYRHVRQQHTGRVISVLDMGSHCTFYPRIVGKKSNRQRGDPLHLEETYKCANCPSAFVKRTSLSKHMKYWCNQNFRYKCSYCDMKSQAKFNVFRHVKRQHNGFLVKLEDLYNTLTDNLVYQETFKCVNCPSSFKTMIHLARHVTYGCNQNCRYKCSYCDMKSQDQYNVYRHVRNQHTGMVVSLLDIFDDSIFTGDLVYGESFKCSNCPSSFISRTGLSRHVTYGCNQNFRYKCSYCDMKSQNKSNAYRHVRSQHIAFFTAGPHYVKPYNCKNCPCSFASRKGLAKHVKYGCNQNFRYKCSYCDMKSQDTFNVYRHVRNQHIGMVVSLLDMYRLVSTHRWPHSSEYHQWNDETGKFHCAKCNKGYGRRDTMINHYRYECGKGPRFKCPYCHLRSRRTSSIYQHIRKVHQKKPVTTVKLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -