Ajap003096.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- L
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000003.1:2444454-2454255[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8e-05 0.0045 18.1 1.4 1 23 97 119 97 119 0.98 2 19 0.29 46 5.5 3.9 1 23 125 147 125 147 0.97 3 19 6.3e-07 0.0001 23.3 4.3 1 23 153 175 153 175 0.99 4 19 0.00018 0.029 15.6 1.6 1 23 181 203 181 203 0.98 5 19 0.0073 1.2 10.5 0.5 2 23 242 264 241 264 0.96 6 19 0.022 3.5 9.0 1.2 2 23 295 317 294 318 0.93 7 19 0.1 17 6.9 0.1 2 23 325 347 324 347 0.88 8 19 0.11 17 6.8 0.1 3 23 380 400 379 400 0.97 9 19 0.023 3.6 8.9 0.5 3 23 412 432 412 432 0.97 10 19 0.051 8.1 7.8 0.1 2 23 442 464 441 464 0.91 11 19 4.2 6.8e+02 1.8 0.2 1 23 469 492 469 492 0.82 12 19 1.4 2.3e+02 3.3 0.0 10 23 515 529 514 529 0.95 13 19 0.17 28 6.2 7.3 1 23 551 573 551 573 0.98 14 19 0.0062 0.99 10.7 0.1 1 23 578 601 578 601 0.95 15 19 0.1 16 6.9 0.9 1 23 638 662 638 662 0.90 16 19 5.3e-05 0.0085 17.2 0.3 1 23 676 698 676 698 0.98 17 19 0.00062 0.099 13.9 0.2 1 23 708 731 708 731 0.94 18 19 0.74 1.2e+02 4.2 0.1 3 23 740 760 738 760 0.96 19 19 7.9e-05 0.013 16.7 0.6 1 23 894 916 894 916 0.98
Sequence Information
- Coding Sequence
- ATGCTGTTCAAAGGGAATAGTTCGAGATTGGAGTTTCTAATTGAGAAAATTCAAGCGCACAAAGAGTCACCCTCACCGATCCCAGAGGAGAAGTGCAGTGCGAAGTTGAAGGATGGACTTCTAGGAAGCGGTTACTCTTGGCGAAGTGAAGAGGACAGTCTAACTTGCCAAAGAGGTGGTGGCACACCATCATCCTGCGCCACTTCCACGTCTCAAAGTTTTCCATCAGAAACGGAGATCGATGGTGATGTAAGAGTTAATGGTGATGCACACATCTCTTCCGGCCCATACTCATGTCAATTTTGCGATAAAGCATTTCCTAGTCTTACTTATTTGAAAAAACATGAACAGAGCCACGGCGATCAGATGCCTTACAGATGCAGCTGGTGCGCAAGATTGTTCAAACACAAACGAAGTAGAGATCGCCACGTGAAACTACACACTGGGGACAGGAGATACCGTTGTACCCACTGTGAGGCAGCATTTTCACGAAGTGATCACCTGAAGATTCACATGAAGACCCATGACAACCAGAAACCGTACCACTGTACAGAGTGCTCTCGTGGATACAATACAACAGCGGCATTGACGTCACACATGCAATCGCATAAACGTCCGCCAAGTGCTCCACACTATCAGCGCTCCCTGCCGGCCTCTTCACCACCTACACTAGCGTCTCCTGATGGCAACGCCAAGATCCACTACCATTCTCCTCTTCACCTGACCTGCATGTACTGCAGAGACACCTTCACCAGCATGGACCAACTACAGCTTCACGTCCAAACTGCTCACGAAGCCCTCCACCCTCTTCGATCTCCACTATCCACCCCGCCTTCGGATTACCCTCGATCCAGACCGCAACCCGACGATCTTGAAGATCTCACTTGTCGTCGATGTTCAGCGAAATTCAGCAAATTGTCAGCCCTCCGTGAACACCTGGTCTCCGTACATCACGATGGTTTTTCACCCCTCACTTGCCCATTATGCTCCAAGCCTTGTGCCTCAGCGACAGCCTATGCCGAGCACTACGTCCTCGAGCACTGTGAAAATTCGACTCTTTCAAGACCCAAAAATCCCACAGTTCAAAAGTTATCTGAATCGCCCAAAAACGAGAGCTACTCTTCAGGGACACTCCTTTGCGGCCAGTGTGGTGCTGCCCTAAAAGACTTCGAGTCCTTTCGAATACACCTGGCTCGACATCTCCATGCCAACCAGCAGGCAGCGGGAATTGGCTGCCCCAAGTGTGAGCTCAAGTTTCCAAATCGAGAGGATATGATGATTCACTTTACGAAGCACTTCATGGGACAAATTGTGAAGAAGTCTAGTTGTGATGCCTGTGACGAGCTTTTCGTCGACTCTGAGAGGCTCCAGAAGCATTTGTTGGACGCTCATGCACATCATCTGTACAGATGCGGTATCTGCAGAGATACGTTTGATTCAATTGTGGGAATTCAGGTGCACTTTAGTGTGAAGCATTCCCAGCAAGTTACCATTTATAGTTGTGGTTCATGCCGAGGTAGATCAGGAGTGGAGGGAGATGGTTTCAGGACACCTGGAGAGCTTCTGGATCACGTGAAGACCGTTCATGCACCGGAAAATCTCAACTCCCCAGGCAACTCTGTCTCAACTCCCAGAGTGATTGGTGAGTTCTTCAGATGCTGCTTCTGCGGAACTTTCTGCACTTCAGATAACGATCTTCAACATCACCTTGCCAGCCACTCCACATGTCTCTTCAGGTGTCCCATATGCAGAGAGGGTTTCCCCGTTGAATTTCTCTTGGACAAGCACATCGCGAACACTCACAATGTAATGGAGCGCTCCGAAGACTCTGAAAGCGCGAAACGAAGAAGATCACCGAAATTCACTCTAACTCCTGACCAGTCTCTCAGCACTGCAACAGCACCGCGCACTCACCAATGTGATCTTTGCGATAGATCCGACTTCTCGAGTGATTCTGAGCTCAAAGCTCACAAGAAACTCGCTCACAAAACGCTGTCTGCCAAACTGCAAAAGCTGTCGTCTTCCTTCGTTTGTAGTTACTGTGGTGAAAGTCTGCGATCCAGACTTGAGCTGGAATCTCATACCAGGGTGCATTATGCACCAACTGATGCGGGGAAGAGATATAAGTGCAATATCTGTGATGAAGTCTTGTCATCCGCCAGCTTTCTCGCTGAGCACAAGCTGCAGAAACACTGCAAGATCCAGTTGAGTGATATCTGTGTGGTTTGCAGAACTGTTCTTGCCAATGAGCGGGATTTTCTTGAGCATGTGAATAAGCACAGTATGGTGGGTAGGGAGGGGGGGCTAAACCATATGCCAGCTCATTGTGTTGTATGTAGGCAGACACTTATTAGTGAGTTCGAGTGTCAGCTTCATGCTAAATTTCATTTGAGGAGTGACGATGAGGAGGTGGGTGGTGGAGAGGGTGGAAGATGCTGTATTTGCTTGAGGGAAGTGGGCGAGGGGGAGATGGTCAGTTTAGCGGGGAAGGAGCAGGGGAGTGGGGGTGAGCAGGGGGTTAAGGTGTGTAAGAGGTGTTTTTTGAGGCATTCACAGGGGCTGCCTATCTTGACAAGTCCTTATGAGGTGTGCAAGGAAGAGGGGGATGCAGGCATGGTGAGGGTCAAGGAGGAAGAGGAGAGCTGCAGTTCCAAGGAACAAAATGATTTCACCCGTCCATATGACTGTCCATGGTGCAGTCTAAGTTTCACCGTCAAAAATGAACTGGAGCATCATGTTTCAACGCATGATGAGGGAGAGACGCAGAAAGATACCGTAGACCGTGTCATTATTAAAGAAGAAATTATTGTGAATGCAGGGGAAGAGCTGAATGATGATAAAAATGAGAATATGGAGCTAGACACAGATAAAGTTGACTAA
- Protein Sequence
- MLFKGNSSRLEFLIEKIQAHKESPSPIPEEKCSAKLKDGLLGSGYSWRSEEDSLTCQRGGGTPSSCATSTSQSFPSETEIDGDVRVNGDAHISSGPYSCQFCDKAFPSLTYLKKHEQSHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCTHCEAAFSRSDHLKIHMKTHDNQKPYHCTECSRGYNTTAALTSHMQSHKRPPSAPHYQRSLPASSPPTLASPDGNAKIHYHSPLHLTCMYCRDTFTSMDQLQLHVQTAHEALHPLRSPLSTPPSDYPRSRPQPDDLEDLTCRRCSAKFSKLSALREHLVSVHHDGFSPLTCPLCSKPCASATAYAEHYVLEHCENSTLSRPKNPTVQKLSESPKNESYSSGTLLCGQCGAALKDFESFRIHLARHLHANQQAAGIGCPKCELKFPNREDMMIHFTKHFMGQIVKKSSCDACDELFVDSERLQKHLLDAHAHHLYRCGICRDTFDSIVGIQVHFSVKHSQQVTIYSCGSCRGRSGVEGDGFRTPGELLDHVKTVHAPENLNSPGNSVSTPRVIGEFFRCCFCGTFCTSDNDLQHHLASHSTCLFRCPICREGFPVEFLLDKHIANTHNVMERSEDSESAKRRRSPKFTLTPDQSLSTATAPRTHQCDLCDRSDFSSDSELKAHKKLAHKTLSAKLQKLSSSFVCSYCGESLRSRLELESHTRVHYAPTDAGKRYKCNICDEVLSSASFLAEHKLQKHCKIQLSDICVVCRTVLANERDFLEHVNKHSMVGREGGLNHMPAHCVVCRQTLISEFECQLHAKFHLRSDDEEVGGGEGGRCCICLREVGEGEMVSLAGKEQGSGGEQGVKVCKRCFLRHSQGLPILTSPYEVCKEEGDAGMVRVKEEEESCSSKEQNDFTRPYDCPWCSLSFTVKNELEHHVSTHDEGETQKDTVDRVIIKEEIIVNAGEELNDDKNENMELDTDKVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -