Ajap029373.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000001.1:1192533-1201281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0073 1.2 10.5 1.9 1 23 271 293 271 293 0.97 2 19 0.074 12 7.3 0.5 1 23 342 364 342 364 0.98 3 19 0.0036 0.58 11.4 0.3 1 19 403 421 403 423 0.95 4 19 0.23 37 5.8 1.7 1 23 436 459 436 459 0.85 5 19 1.1 1.7e+02 3.6 6.0 2 23 465 486 464 486 0.95 6 19 0.023 3.6 8.9 0.1 3 23 514 534 512 534 0.97 7 19 1e-07 1.7e-05 25.7 0.5 2 23 578 600 577 600 0.97 8 19 0.00013 0.021 16.0 0.2 1 23 606 629 606 629 0.94 9 19 0.27 43 5.6 5.0 1 23 640 663 640 663 0.97 10 19 0.00016 0.025 15.7 1.9 3 23 673 693 673 693 0.95 11 19 0.35 56 5.2 0.0 3 20 752 769 750 769 0.94 12 19 0.0025 0.39 12.0 0.1 2 23 788 809 787 809 0.97 13 19 8.6e-05 0.014 16.6 0.6 2 23 825 846 824 846 0.96 14 19 9e-05 0.014 16.5 0.3 1 23 867 890 867 890 0.91 15 19 0.055 8.8 7.7 0.3 2 23 950 972 949 972 0.95 16 19 4.7e-05 0.0075 17.4 0.2 2 23 993 1015 992 1015 0.94 17 19 0.49 78 4.7 0.4 1 23 1021 1045 1021 1045 0.92 18 19 3 4.8e+02 2.3 1.6 1 23 1050 1073 1050 1073 0.93 19 19 0.26 42 5.6 0.1 2 23 1103 1125 1103 1125 0.93
Sequence Information
- Coding Sequence
- ATGGAACAAGTCGTTGAGCCGGAGGGCCTAGAAAGTGTCTGTCGATTGTGTTTATCACCAGACGAGCCAAAATCACCCATTTTCGGCATTCAAAAGGCATTAATACCATTATGTGAGAAGATTCAAGACTGTCTCAGCATTGAGGTGCTAGAGGACGATAAACTGACGACCCTCATTTGCGGAAATTGCGTAAAGAGTGTCAATCAGTGGTATGGATACAGGGACAGTTGTCTCAGGTCGCAGGAAAAGCTGCAGAGATGGATTGCTGGAAAGCAGAACCCAATTCCGATTAAATCGGAGCCAGTGGATCCCGAAGATGTTTCCTCGACAGAGGAACTTATGGACACGATGGAGGACGTGCAGGATTCACCGGAGGATACATTACCTCCTCGTTTGAAGCGCCGTCGTTCGTCAAGCATGGTATCGTCGGAACCTGACTCAGTCCCTGGCACGGAGCTTCTGCTCAATCCCATGGCAGTTGCTGCGAAAGATCTCCGAGAGACCTCCAATGCATGGCCGCACTCGACCCACTATAAAAAACTAAAGCACACTCCCCAAAGTCACTTCCGTGGCCTCAAAGTATTCAAACGTAAGTATTCCTATTGGTATCTGAATCAAATCAATTGCTTCCACTCACTAGCCGCCTATAAATCACGAAATGGTCCCTCATTCCGCACAGCTCTCGCCGACAAATCGGACATCGACGAGGACGTCGAGATGGTGGAGGATATCGAGGACGAGCTCATTTCAATGGAGAAGAATGCACCGTTGACACAAGTCCAAGAGAACATAATAAGTCAATTGAAAACTTTCTCCTGCTATTCCTGCCAGCAAGTATTTTCCGATCGGCGAAGCACCCTAAATCACATTCGCCAGCATATGCCAGATTTGCGCCCATATACGTGCATCGCTTGTCTTACGGAGTTTCCAGACAGATCAATATACAAACTGCATTGTGGTGCCTCCTTCGAGTGTGCTATGAAGATTGCACTGGTAACCCCAAAGCACGGCACCGAAAAGTATTTCACTTGTAACATGTGCCTTAGACCGATGCCCAACCGTAAAGAGCTGTTGAGCCACTTGTCCAAACATTCAGACAAACAATATGAAGCATTGACTAGCTCTAGTCCCTCAAAATCCTCACTGAAGGGTAGAGAAAGATCAACCACTCCAGGACCATATAGACATGGAGATCCTGCGCACAATCATACTTGTGATTATTGCGGAATGATCTACAGATACAAGCCCAACATGATGAAACACGAAGATCTCTGCAAACGTCTTCCACCAGACGAAAGAACTTCATATCGCTGTGCACATTGTGGAATGACATTCTTAGTCTTCAAGAAGTTCCAATCCCACGTAAACGCTGATCACAATAGAAAAGACCTAGTCTGCTACGTCTGTCATTCCAAGTTCAGGCACTCGAATGAGTACTTAATACACCATCAGCAACATCGGAACAGTGCATTAGAAAGAGCGGATGGACAAAATCTGTGGAAGACCTATAACTCACCAAAGGTCACCATGAAGTATGGATGTGCTGTCTGCCCAGAGGAATTCCTAACGAAGGATGAGCTGATTCAGCATCGTAGTACTCATTCAAAAATGAAGAGTTTGAATCAGAATCATGTCAATCTAATTGAGCCAGACACCGATGACAGCCCAAGTCCGTCTGGATCAGAAATGAATGCTTCCTATCCAATGCCAGCAAGTGTTGGTCGAAGTACAGAGTGTACGACTTGCGGCAAATCCTTCGCCAACTATCCCAACCTCAGGCGACACATAAGAACGGTTCACATTGTTTTAGGTAGGTTCAGTTGTCCGAGATGTCCGAAAACCTTCACCAGTGAAGATCTGTGGAATCAGCATGCAGAACGAGCACATCCCAAGGAAATCCCGGTGGAAATTCCCGAGTTCCAATGTCACGAGTGTAAAAGAATATTAGATTGCCAGGAGTCCTTGACTCATCATCTTCAAATCGAGCATGGGATATCCGAGGACGATAACTTGGGCTGTGACATATGTGGCAAGCGATTTAGTAATGAGACATCTTTGAAGATTCACCGAGGCCACCACTTCAGACGAGACTCACGATTATCCATTCGATCAGCGCCTTATCCATTGGATCAGGTACAAGTTGAGCTGGAAGAAGAGCCAATGGAGCTCAACCTAACTCCTCGACCAGCCAAGGCCAAAAAATCTTTCCCAACGCCAACATTCAGACAATCCTTATCACCAGGCCAGCTAGCTTGTGCTGTCTGCGACGACGTTTTCATGGATGTCAGTGAATTGAGGAAGCATTTATGGGAAGTACACTGTCAAAAGCAAAAAATCGAGAAGTCTTTCATTGTAGATCTTCAGTGTGAGCTTTGTACCAATGTTTTTGCAGATGAAAAAGCTCTTGATGAGCATATGAGGTGGCACAAGGAAAATCCTATTCTTGCCGAAGTACCACGACCAGTCGACATTTCTTGTGACATTTGTGGAAAATTCTATAGCTCTACTAAGGCCCTGTGGAAACACAAGAAACTTCATAAGACAACACCGGTCAGTGGAATGAAATTCCAGTCACTTAAGAAGATAACTCCTACATCATTTCCATGTCCTGTTTGCAAGAAGGTCTTCAATAACGAGACTTCTATGAAGAAACATAAGGCTGCAGCACATTATGTGAGAAAATCGACTGGTTCGCTGCCCCGTAAATCACCATCTCCCTCAAAAATCGATGATGATGGCAAACCAAAGAGGCCAAAATTGGACTTTGATATTATCAGAAAAGCGTATCATTTGGGTGAGCCTTCAGGAAGCTCTTTTGGCACACCGAACCCACCGAAAAAGCCAGTTACTTGTGGAATTTGCAAGAAACTTCTGCCTAGTATGAGCTCGCTTTATAAGCATCGTCAAAACGTTCATAAAAGCAGCATTGGGAAACCGTTGGAAGTTGACGAGGGGGAGGTAGAGGGTGAGGGTGTACCCTGTACAGAATGCTATAAAGTGTTCTCCAACCCAGCCAATATGAAACAACATTATACAAAAGTACATGGTAATGGCGACCTCCATTACTGCACAATGGACGATTGTGAGGAAGTTTTTGATACTTCTTTAGCAAAGCAGGCACATGAAAAAGGCCATATGAATATTTTATACAGCTGTAATCTCTGCTCCAGGCATATGTTCAATAGATCAGCCATTGACAGCCATCTCAGTACGGACCATGAAGAGGAAGTTGAGGGGAGAAAAACTGAATTGCTATATAGAAAAACGGATTTGGGAAGTTATGAGGTCAAGGGTGCTGATGGCAGAGTCTGTCCTATTTGTAGGATTAAATATCCGAATATTAAAGCTATGAAGATTCATTATGTGAAGATTCATGAGGGCGCAAGTTAG
- Protein Sequence
- MEQVVEPEGLESVCRLCLSPDEPKSPIFGIQKALIPLCEKIQDCLSIEVLEDDKLTTLICGNCVKSVNQWYGYRDSCLRSQEKLQRWIAGKQNPIPIKSEPVDPEDVSSTEELMDTMEDVQDSPEDTLPPRLKRRRSSSMVSSEPDSVPGTELLLNPMAVAAKDLRETSNAWPHSTHYKKLKHTPQSHFRGLKVFKRKYSYWYLNQINCFHSLAAYKSRNGPSFRTALADKSDIDEDVEMVEDIEDELISMEKNAPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVTPKHGTEKYFTCNMCLRPMPNRKELLSHLSKHSDKQYEALTSSSPSKSSLKGRERSTTPGPYRHGDPAHNHTCDYCGMIYRYKPNMMKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHVNADHNRKDLVCYVCHSKFRHSNEYLIHHQQHRNSALERADGQNLWKTYNSPKVTMKYGCAVCPEEFLTKDELIQHRSTHSKMKSLNQNHVNLIEPDTDDSPSPSGSEMNASYPMPASVGRSTECTTCGKSFANYPNLRRHIRTVHIVLGRFSCPRCPKTFTSEDLWNQHAERAHPKEIPVEIPEFQCHECKRILDCQESLTHHLQIEHGISEDDNLGCDICGKRFSNETSLKIHRGHHFRRDSRLSIRSAPYPLDQVQVELEEEPMELNLTPRPAKAKKSFPTPTFRQSLSPGQLACAVCDDVFMDVSELRKHLWEVHCQKQKIEKSFIVDLQCELCTNVFADEKALDEHMRWHKENPILAEVPRPVDISCDICGKFYSSTKALWKHKKLHKTTPVSGMKFQSLKKITPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKSTGSLPRKSPSPSKIDDDGKPKRPKLDFDIIRKAYHLGEPSGSSFGTPNPPKKPVTCGICKKLLPSMSSLYKHRQNVHKSSIGKPLEVDEGEVEGEGVPCTECYKVFSNPANMKQHYTKVHGNGDLHYCTMDDCEEVFDTSLAKQAHEKGHMNILYSCNLCSRHMFNRSAIDSHLSTDHEEEVEGRKTELLYRKTDLGSYEVKGADGRVCPICRIKYPNIKAMKIHYVKIHEGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351346;
- 90% Identity
- -
- 80% Identity
- -