Ajap016332.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000133.1:669700-674793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.53 85 4.6 0.2 3 20 8 26 6 28 0.85 2 14 0.47 76 4.8 0.0 2 20 34 52 33 54 0.92 3 14 2 3.3e+02 2.8 0.3 1 12 215 226 215 235 0.88 4 14 0.13 21 6.5 2.4 1 20 370 389 370 391 0.94 5 14 0.00087 0.14 13.4 4.7 1 23 395 417 395 417 0.97 6 14 2.5e-05 0.004 18.2 2.8 1 23 426 448 426 448 0.98 7 14 0.0038 0.61 11.4 0.4 1 23 467 488 467 488 0.83 8 14 0.00029 0.047 14.9 0.1 2 23 494 515 493 515 0.95 9 14 3.8e-05 0.0061 17.7 4.8 1 23 565 587 565 587 0.99 10 14 1.7e-06 0.00026 22.0 3.7 1 23 593 615 593 615 0.96 11 14 7.3e-05 0.012 16.8 5.1 1 23 621 643 621 643 0.98 12 14 7.5e-06 0.0012 19.9 1.1 1 23 649 671 649 671 0.98 13 14 0.00019 0.031 15.5 0.1 1 23 675 697 675 697 0.98 14 14 6.7e-05 0.011 16.9 0.1 1 23 705 727 705 727 0.98
Sequence Information
- Coding Sequence
- ATGGGATCTTCAATTTTAGTTTGCCCCATGTGTTGCAATGAGACGTTTGGCAGTTTGAGGGAGCTCAAGGAACATTTAGTTAAAATGACTAATAATTTATATTGTCCGAGTTGCTCGGAGAAGTATGATACTGTTGCTGGATTAATTCAACATTTGGAGAATTGTGAGGCGGGAAATAATTTGACGTTTGAGGAAAATGTGGGCGACCTCAGGGCTGAGGATAGTGAAGTGCTTATGGATACGAATGTCGAACAAATTCATGAAAGTTTTCTTGCAAGTGTCAACAACGAGGGGATTATGATCGTTGGAGGACCTAGGGCTCTGGAAATGGACGAAGATGGTCAGATTAAAGTGGTCCAGAAAATGGAAACTGAGGATGACATTGAGGAGTCGATCTTGCCAGGTGACGAGTACGAGGTCCTCGACAATATCACCGAGAACACTTCCCCAAAATCGACTCCCTCGAAGTCGGAAACCTGTGATACCCCAGTTATCAGCATCCCAGAGACCTCATCTTCCCTAATCTTCCAAGATGAATCTACAGATTTTCTTGACGAGGATCAAAGTTTAATAGAAATGAACCAAGATGAAACCAAAGAGCTCGGAGAAGATGACTTAATGAAGATCGATGCATCAGCGTTGTACAGTTGTAGCAGTTGTGGAATGGGCTTCAATTCAGTTTTGGACCACATTAAACAATTTCATGATGGTCAAGAGGTGGTCCTGGAGATGGCAGAGGAAACTGCAGCAGCTGATGACATTCCTGAAATTCCGGAGGAGCCTCCTGAGCCTGTAGCAAAGAATAAGCGTCAGAAGATGAACACAATTAAGACTGAGGAGTGTATAGATTCTGAGGGAAGACTTTACACAAGAAAAGTCGTTCAAATTGAGCCATTTTGGGACCGAAAACAGAGCAAATCCACGGCTAAGCCACTGCTAAGCAAATCCACAGCTAATCCACCGCTCAGCAAATCCACAGCAGATCCACCTCCAATCACGCTCCAGACTGAAGAGAATAGAATAAGCAATGCGCCAACCATTGAGAAGATTTTCTGCAATCGAAGTGTTTTGACGAAAGAGAAGCCTCCAGCAGCGCTACCTAAGGCGTATCGTTGCAACCAGTGCTTACAATATTTCCCGCGCTTAACCGACTTTCGTACGCATGCGTGCCAGAATGGCTCGCATCACTGCGATCACTGTGATCAATCATTTGCAACGATAAAGGCACTGCAATTGCACACCAAAGTGCACGAGGAATTTCAGGATGCTAATCAATTTGTTTGTACAATTTGTGGAACGCAATTTTCATCGCACAAGAGCTTGCGCTTGCATTCGCGCATGCACGCGCCGGTGCGTGAACGACACGTGGATGCGCCCGAGGGCGATTCAGATGAGAGTTTTACGTGTTTGGAATGCGGAAAGTCATTTTCGGAGTCCTACAGAAGTGCTCACCTGGCTTTGCACGCTGGTGACGCAGTAACCTGCACAATTTGCAACCGTAAATTCGATTCTGCGGATTCCCTGGCTATGCATGCAGCGGTCCATCCAGAATTGGGGGATTCCCCGCTCGTACTTACCGAGCGAGCCGCCAAAAAATCCAAAAAATCGAAGGGGAAAAAATCGGACGATCCTGACAGTAAGGAGGACATTTCATCAACAAATGAAAATAATTCTGAAGAAATTTTGAAGCCATATCAATGCCAGCATTGTGGTAGACGTTTCACGAGGCCCCATGAAAAAGTGAAACACGAGAGAATTCACACTGGGGAAAAACCCCACGCTTGTGAAGTATGTGGAAAAACCTTCAGAGTCTCCTACTGTTTGACCCTACACATGAGGACCCACACTGGAGTGCGCCCTTATGAATGCAAACATTGTGGCAAGCGCTTCAAGGCATCATCTGTCTATAATCATCATTTGCTGACCCATGGCGATGAGAGGGCATACAAATGCCCTTATTGTGTGAAAACCTTCAAGACTAGGGTGCAATTGGCGGGCCACAAGAACAGCCACACAAAACCTTTCAGGTGCACCGAGTGCTCAAGGCCATTTGCCTCGTTGTATGCAGCTCGAGCTCACATTGCCACCCACAAAAAGGACAATAATTTGAAATTTATGTGCTTTATATGTGGCGCTTCTTATGGTCGAGCATTTGCCCTGAACGATCACATGAAAGTTCATGAGAGCCAGGCGCTGTGCCCACCAGAGCCAGCTAATGAGGAGATTATTCTCGGGGATTTTGTGCTAGAGGTCCAGTCTGAGCAAGAGCTAGCTGAGGAAATTTCTCCTGATCTCTAA
- Protein Sequence
- MGSSILVCPMCCNETFGSLRELKEHLVKMTNNLYCPSCSEKYDTVAGLIQHLENCEAGNNLTFEENVGDLRAEDSEVLMDTNVEQIHESFLASVNNEGIMIVGGPRALEMDEDGQIKVVQKMETEDDIEESILPGDEYEVLDNITENTSPKSTPSKSETCDTPVISIPETSSSLIFQDESTDFLDEDQSLIEMNQDETKELGEDDLMKIDASALYSCSSCGMGFNSVLDHIKQFHDGQEVVLEMAEETAAADDIPEIPEEPPEPVAKNKRQKMNTIKTEECIDSEGRLYTRKVVQIEPFWDRKQSKSTAKPLLSKSTANPPLSKSTADPPPITLQTEENRISNAPTIEKIFCNRSVLTKEKPPAALPKAYRCNQCLQYFPRLTDFRTHACQNGSHHCDHCDQSFATIKALQLHTKVHEEFQDANQFVCTICGTQFSSHKSLRLHSRMHAPVRERHVDAPEGDSDESFTCLECGKSFSESYRSAHLALHAGDAVTCTICNRKFDSADSLAMHAAVHPELGDSPLVLTERAAKKSKKSKGKKSDDPDSKEDISSTNENNSEEILKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECKHCGKRFKASSVYNHHLLTHGDERAYKCPYCVKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIATHKKDNNLKFMCFICGASYGRAFALNDHMKVHESQALCPPEPANEEIILGDFVLEVQSEQELAEEISPDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -