Ajap017228.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000064.1:1253030-1256071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.014 2.3 9.6 5.2 1 23 144 167 144 167 0.97 2 15 8.2e-06 0.0013 19.8 0.4 1 23 172 194 172 194 0.97 3 15 0.063 10 7.5 5.0 2 23 200 222 200 222 0.95 4 15 0.015 2.5 9.5 0.1 2 23 228 252 227 252 0.92 5 15 0.0013 0.21 12.8 0.4 1 22 260 281 260 284 0.90 6 15 0.0038 0.61 11.4 0.2 1 23 291 313 291 313 0.98 7 15 0.15 24 6.4 4.4 2 23 407 428 406 428 0.97 8 15 0.27 44 5.5 1.9 1 20 436 455 436 459 0.94 9 15 0.0035 0.56 11.5 1.6 1 23 470 493 470 493 0.96 10 15 4.1e-06 0.00065 20.7 2.4 1 23 499 521 499 522 0.95 11 15 0.011 1.7 9.9 0.8 3 23 529 550 527 550 0.94 12 15 0.0006 0.096 13.9 0.8 1 23 555 578 555 578 0.97 13 15 8.7e-07 0.00014 22.8 2.2 3 23 586 606 585 606 0.97 14 15 8.6e-06 0.0014 19.7 3.3 1 23 612 634 612 634 0.97 15 15 8.5e-07 0.00014 22.9 0.1 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGAGTCCAATAGAACATATGAAGTGCGATAATGACGAAATGAAAAGCTGCAATTCCAATGGTCATTTTCCGATTTTCAACACTGAAGGCTATCCTTGGTGGAATCGCAAAGTGTTGGTCCAAATTCCCTATAACAGTGAAATTAAACCGGATAAATTGTCTCCATACTCTTCACCCTTACCGCCAATATTATATTCTAAGCCACCTGAATCACCATTCTTGGATACCAGGAAGTCAGCTGCAACATGTCCAACCGGTATCGAAAGTAGACCAATTATGCGGAAGAGCGTTTCAGCTGAAATACTTGCAGCTAGGTACAAGCGAATCAAGCCGCTCCCAAATACTAACACGGAAGTTGCTAAACCACAATGGATCACGGAATCACCATTCCTGGGGACCAGGAACCAATCAACGACATCAGAAAAACTCTACTACTGTCTCTACTGTGACTTCAGAACAGCACATCGCAGTTCATTATACTCTCACACAAAACGCAGGCATGGAGGCAAACCTTACGAATGTGATTATTGCCAAAAAAGCTTTCCTGTGAAGGTAGATCTGAGATATCACATTGAGAATCACATGGGTGGTCCCCGAACATGCGACTTTTGTGGATTCATCAGCAAGCATAAGTCAGCGTTAACTTCTCACAAGCACAGAATGCACAAGTCGAAACTGATCAAGTGTGATGTGGGAGGTTGCGGGAAAGCTTTCATAAATGAGGTGAGATTTCAAATGCACAAGGCTAAAATGCACTTGAGTAAGATAGAGTGTAGATTCTCTTGCGATGCTTGCAATAAAAAATTTGTGACCAAGCAGACGTTGCTTTATCATTTGGAGATTGTTGATCATGATAAGAGACATCCAGAATTTCCGTGTAAAGAATGCCGGCTGATATTTCCCGTGGAGTCGATACTGAAGCGCCACCAGATGTCTCACCCGTCGTATTACCGCATGTTCCAAAAATTCCCAAGAAACCGCCAAAATCACGTGAGCTTGGAGAGCCATCTACAGGGGACGCTGTCAACTAAAATCGAGCCAATGCCGCCTGAGTACAGACCCCCCAAAATTGAGCAGCTCCCCGAGATAATTGAAGAGGAAATATTGGACGAAGAGTTGCTAGAAGAGATGGAGCAATCAACTGTGGTGGCTGCATCTACTTCAAGCCCAAAAACGATACTCCGTAAAATGATGCTGCACCGGAAAGCGTCACCCTTGAGCTGTGACAAGTGCAGCTATACTTGTGCAAAAAGAACAACGATGTACGCACACAAACGCAAGCACACTGCATCAGATCCCGAACTGTATCGTTGTGGTAATTGTTCCTTCAAAAGTACGAAGAAGCCATCGTTGTATTCGCATATGTGGAGAAAGCACAAGGTACCAAAGGACACAGAAGCCGAGCTCTTCTCCTGCAGTCAATGTGACTACAGAAACAAGAATAAATATGAGTTAAAAGTGCATATAGCCCGTAAGCATACTGAGGATTATAAATTTTCGTGTGAAACGTGCGGCAAACAGTTCAAAGTGAGAGGTGACTTGACTAATCACATAAGATTCCATCATAAGGAAGGGCCAGTGATATGCGACGTGTGTGGCAAATCGTGCTTAAACAGTAATTCCTTGTACGTACACCAAAAGTTCGCGCATTATAAAGCAAAGTACGAATGTAAAATATGCAAGAGGCGAATGGTGAACCAACGAAACTTGGATGAGCACATGTTGCGCCAGCATGAGAAAAGAGAAGTGGCTATGTGCGAGGAGTGTGGAGAATCATTTACCAGGCATAGTAGACTCAAGTCTCACATGAGGATTCATACGGGAGATAAGCCCCACAGTTGTCATGTTTGTAAAAAGGCATTTGCTAGGAAAACTGCCCTGAAGCAGCACTTGCTAATCCATTCTGGTGTGCGACCATATGCTTGCGATATATGCGGTAAGGCGTTTACGCAGAAGCCAGGTCTCATCAGCCATAGGAAGTCTCATCCAGGCGAGCATCCGCCCTTGCCCAGAGTTCATATAGATCATATTTTGAGCGATGTGATGAATAAAAGCTGA
- Protein Sequence
- MSPIEHMKCDNDEMKSCNSNGHFPIFNTEGYPWWNRKVLVQIPYNSEIKPDKLSPYSSPLPPILYSKPPESPFLDTRKSAATCPTGIESRPIMRKSVSAEILAARYKRIKPLPNTNTEVAKPQWITESPFLGTRNQSTTSEKLYYCLYCDFRTAHRSSLYSHTKRRHGGKPYECDYCQKSFPVKVDLRYHIENHMGGPRTCDFCGFISKHKSALTSHKHRMHKSKLIKCDVGGCGKAFINEVRFQMHKAKMHLSKIECRFSCDACNKKFVTKQTLLYHLEIVDHDKRHPEFPCKECRLIFPVESILKRHQMSHPSYYRMFQKFPRNRQNHVSLESHLQGTLSTKIEPMPPEYRPPKIEQLPEIIEEEILDEELLEEMEQSTVVAASTSSPKTILRKMMLHRKASPLSCDKCSYTCAKRTTMYAHKRKHTASDPELYRCGNCSFKSTKKPSLYSHMWRKHKVPKDTEAELFSCSQCDYRNKNKYELKVHIARKHTEDYKFSCETCGKQFKVRGDLTNHIRFHHKEGPVICDVCGKSCLNSNSLYVHQKFAHYKAKYECKICKRRMVNQRNLDEHMLRQHEKREVAMCEECGESFTRHSRLKSHMRIHTGDKPHSCHVCKKAFARKTALKQHLLIHSGVRPYACDICGKAFTQKPGLISHRKSHPGEHPPLPRVHIDHILSDVMNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -