Ajap004154.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000015.1:2819000-2824552[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.033 5.2 8.4 0.0 1 23 295 317 295 317 0.93 2 12 0.97 1.5e+02 3.8 0.1 6 21 323 338 319 339 0.92 3 12 3.6e-06 0.00057 20.9 1.5 2 23 377 398 376 398 0.97 4 12 4e-06 0.00064 20.8 0.3 1 23 404 426 404 426 0.98 5 12 0.00019 0.03 15.5 2.4 1 23 432 454 432 454 0.98 6 12 5.3e-06 0.00086 20.4 1.3 1 23 460 482 460 482 0.98 7 12 0.00022 0.035 15.3 1.0 1 23 488 510 488 510 0.98 8 12 1.1e-07 1.7e-05 25.7 0.5 1 23 518 540 518 540 0.98 9 12 0.0036 0.57 11.5 0.2 1 23 546 568 546 568 0.94 10 12 5.7e-05 0.0091 17.1 3.0 1 23 574 596 574 596 0.98 11 12 1.6e-05 0.0025 18.9 0.6 1 23 602 624 602 624 0.98 12 12 0.00085 0.14 13.4 5.4 1 23 630 652 630 653 0.95
Sequence Information
- Coding Sequence
- ATGGCAGGTGTTGATGACTTTGATTATATGTGCCGCTTGTGCGCGACGAAAACGGAAATTTTACTTGGATTACCAATTTTTGATCATGCTGATAATGTCAGGCGGATTGATAAAAAAATTGTGGAGTGTCTGCCAATTCAGGTATCGATGAACGATGAGCTGCCGAAAGTGATTTGTGAAGAGTGTGCATTTCGACTAGACGATCTTTTCGAGTTCCGAGAGAAATGTCGCCAGACAGAGGACTTGTTTCTGGAGATGCTCAAGGGTCTAAAAAGGGGTCTGAGTATTCTCACCGTGATGCCCCAGATTGCGAGGGAAATCGACAGATTGCAGGAGGACATTTCCGGGCTTACGAGGGAAATCGAGCAAAATGGTTTGGACAGTATTGAGGGGACTGTCCAAGGGGATGACTCCAACGTCCACTCGCTTCAGGTGATGGACGACATGGACCTGGCAGGAGGTGAGCAAGTGGTATCCAATGAGATCCATCAAGACGAAATCGAGATAACTGAGATAGATCCACTAGAGGAGAATGCAGTTGAAATAGTGAGGTCCCACATAGGTCCAATTCCCGTCTCCGAGCACCAGATCGCAATATTAGAGGATCACATGACAGTTGTGGATCACATGGGGATGAATTACGTGACGGGAATAGATTCAGAATCACCAACTGAAGGACAAATCTACGACAACAATGTGAAATTCGAGGGTACCAAGGAGTATGAATTGCACGAGAGGCTGAATATACTGAACGAAGCTTTGGACACAGCGGGCCCAAGTGAAGATCCAAAACAAATGACAGAATATACGAAAGCGAAGAAGAGAAGCTTACTCGAGACAAGTCTGAATAATCCTACGATCGACGAAACTGGAACGAGCTGGTATGTCTGTCCATTTTGCAACGAAGCATCCACGGAGCCCAATAGCTTAGCTGAACACTTTGATCTCCATTTTTTCACCTGCCCATGTGGCCTCTTCTTCGCCCACGTTGACGATTTGATAGTTCACAAAAAGAGCTGCAAAATTTGGCTGAAAAAATCGAAAACTAAAAATGATAAGGTTGTGGAGGCTGAACCGGCCAAAGAGGAGACGCCAAAAAAAAATCAAGCACGAACGTGGACACCAAAAGTGTGCGCACAATGTGGCAAGCAGTATAGGACAAATTACAAACTACAGGAGCACATGAGGAAGCACACTGGGGAAAAGCCTTTCCAGTGTTCGATGTGTGACAAGGCTTTCAGGAGTAAAATTGGACTGGCACAGCATACAGCAACTCACACAGGCCAGTTTGACTATAGTTGCTCAACATGTGGCAAGGGCTTCCAATGCAAGAGCTACTTGATTGTCCATCAAAGAGTCCATTCAGATCTGAAACCCTATCCTTGTAGTACATGTGGCCAAAATTTCAAGACTAAGCAGTCATTGCTGGATCACCAGAATAGGCACTTGGGTGTAAAGCCCTACATCTGCGATATTTGTGGAAGGGGATTTATCACTAAGGGCTTGTGCAAGAGCCATCAAAAGATACATTCGGGAATGGACAATAGGCAGTACCCTTGCGAGGTATGCAACAAGATGTTCGTTAGCAAAAGCTATTTGAACACACATTTGCGAATTCACACGGGTGAGAAACCCTATCTTTGTGAAGTTTGTGGCAAGGGCTTTCTCACCAGAGTTGACCTGAAAATTCATTCCACTATGCACACGGGTGAGAAGAGCTTCAAGTGTGAAATGTGCAATAAAGTATTTGCCAGGCGAGCCGCCCTGAGGTGTCACAGGCGATCACATACTGGGGAGAGACCATACAGGTGTGACGTGTGCGGCAAGACATTTACTCAGTTCAGTCCTATGGCCATTCACAAGAGATTACATACGGGGGAGAGGCCGTACGAGTGCGATGTTTGTGGTAAAACTTTTGTATCCAGGTCCACCATGATGTGCCATAGGAAAAAACATCATACATCTGTGGCTATGGAGAAATTAGATACCGTCCAAGAAACACGCGAGGAACTTATCGTCGCTGATTAA
- Protein Sequence
- MAGVDDFDYMCRLCATKTEILLGLPIFDHADNVRRIDKKIVECLPIQVSMNDELPKVICEECAFRLDDLFEFREKCRQTEDLFLEMLKGLKRGLSILTVMPQIAREIDRLQEDISGLTREIEQNGLDSIEGTVQGDDSNVHSLQVMDDMDLAGGEQVVSNEIHQDEIEITEIDPLEENAVEIVRSHIGPIPVSEHQIAILEDHMTVVDHMGMNYVTGIDSESPTEGQIYDNNVKFEGTKEYELHERLNILNEALDTAGPSEDPKQMTEYTKAKKRSLLETSLNNPTIDETGTSWYVCPFCNEASTEPNSLAEHFDLHFFTCPCGLFFAHVDDLIVHKKSCKIWLKKSKTKNDKVVEAEPAKEETPKKNQARTWTPKVCAQCGKQYRTNYKLQEHMRKHTGEKPFQCSMCDKAFRSKIGLAQHTATHTGQFDYSCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYICDICGRGFITKGLCKSHQKIHSGMDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCNKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKTFVSRSTMMCHRKKHHTSVAMEKLDTVQETREELIVAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -