Ajap023572.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- -
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000102.1:351425-355929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.9e-05 0.003 18.6 2.8 1 23 355 377 355 377 0.97 2 19 0.018 2.9 9.3 0.4 2 23 411 432 410 432 0.96 3 19 8.1e-05 0.013 16.6 5.3 1 23 487 509 487 509 0.97 4 19 0.0029 0.47 11.7 0.9 2 23 516 537 516 537 0.98 5 19 0.00091 0.15 13.3 2.2 2 23 576 597 575 597 0.96 6 19 6.9e-05 0.011 16.9 3.3 1 23 602 624 602 624 0.97 7 19 0.00029 0.047 14.9 0.4 1 21 630 650 630 654 0.92 8 19 0.008 1.3 10.4 5.1 2 23 717 738 716 738 0.94 9 19 0.0072 1.1 10.5 4.0 1 23 788 810 788 810 0.91 10 19 0.00017 0.027 15.6 0.6 1 20 815 834 815 836 0.95 11 19 0.037 5.9 8.3 0.6 2 23 847 868 847 868 0.97 12 19 2.4e-05 0.0038 18.3 0.6 2 23 905 926 904 926 0.97 13 19 2.2e-05 0.0035 18.4 1.6 1 23 931 953 931 953 0.95 14 19 4.3e-05 0.0068 17.5 1.3 1 23 959 981 959 981 0.98 15 19 6.6e-06 0.001 20.1 0.4 1 23 998 1020 998 1020 0.95 16 19 1.2e-06 0.0002 22.4 0.3 1 23 1026 1048 1026 1048 0.99 17 19 2.3e-05 0.0037 18.4 0.3 1 23 1054 1076 1054 1076 0.98 18 19 0.00012 0.02 16.1 4.1 1 23 1082 1104 1082 1104 0.96 19 19 0.0088 1.4 10.2 0.4 1 20 1110 1129 1110 1131 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGGCATTGATACGTCCGAGCCGTCACAAGATGAGGAGCCTGTTGAATCGGCTGTCGGAATATGTCGCATTTGTTTACACGGAAATCCCATGATGCGAGATTTATTCGCCAATGATGAGGTCGTTGCATTGTCCACCAAGGTCATGAGCTTTACAAATGTTAAGATGATACCTGGTGACGGCCTCCCCTCACAAGTGTGTTGTGATTGCACCGAAAAGCTCGACTCCGCCTACGAGTTCAAACTTCAAGTTGAGCAAGCTGACAACGTTCTTCGTGAGCGTTACGATAATTTGAATATCAAAGAGGAGCTGTTCTTCAATGAAGTCGAGGTACACCTGGACAACGAGCGTCACGAGGACTCTGACAGTGGCGGTAATGGGCATTATGAAACAGAGGCCCTGAGTGTACCATGCCCTGTTGAAAAATCCTCTCTTTTCAAGGATCATTTGGCCCTCCTCGAGGTACAGAAGCTAGCTGAGCGGGAGCAGGTCGCCCTGGACCACTCATCCCTGATCCGTGCACCTGCAGAGCTAACTGCAACTGAAGAGTCCCTCCAATCCCTCGATCACCAAGAGGACTATCTTCACGAAGCCACTCAGTCTCCTCCTCCCCAAATACTGTTATCCACAGAGGATTCTGTCAAGCGGGAAAAATTGACGACCATTGACATGCCCATTGACGAGCACAACTACATGGTGCAGCAAGGCTACACTCTTACAAACGACCAACAACAGCAGCTGTTCGATCCCGAGGAATTGGAAGCCGCCGAGGACGAAGCCCATGAGCATGGTCTTGCTGATCAACAACAAGATGAGCAGGCATTGCATCTAGAATTAGAGGGACAATCCCAAGACTTCACAGAAGCATCACAAGAATCAGCTGAGCCGCAGGCGCTGGAGGCCCAATCACAATTCATTCTCACTGAGCCACCAGCCTCAAAAAGAACTCCCCAAGATTCAGACGTGAATTCTGATGAAGACAACTACTTCGAGAATCTCAATCTCAGCAGCAGATTGAAACAATTTTCAGAGGACAAGTTGGATAAAATATTCTTCATGTGCTACATCTGCGATCGGAAATTTGTGTCGAAGGAATCACTCAAAGAGCACATGCACTCACATGAAGAGGTACGCAAGACATTATCGTTGAAGAAGACACCGGAGAAAAGTCTGAAAATGCCGAGTTCTGTGAAATCTCAGCCATCAGGAAAGAAGTCCAATAAGTGTCCCTACTGTGGCAAGGAGTACCTCTATGTGATATCTTACAATAAACATATTAAGCAGCATGAAAAGAATGCTGACGAGTTGAAGCGAGGGGCCACTGGTGAGGAGTCTGATTCAGATGGCCTGGAGAATGTAGATGGTTTTGAAGTGATTCAGGACCGACCTGATTCCCCAGATTCGGATTTCTCGAACGCGATGAAGAGCGAGGAGCAGGAGGGAGGGATCTTCAGGTGCCCCAAGTGCCACGAGAAATTCCCATCGAAGACCGACCTGCAACGTCATACACTCCATCACAATCAGAATGAGACAGGGAGGTGCAACATTTGTTCTTTAGAATTCGACTCGTTGGAAAAATTGAAGGATCATCGCTCGACCCATGTTATGGAGGGTGTCATGAATGAGAAGGATCTTCGCGATGAGCTTTCAAATATCTGCAGTAAAGAGTATCAGGAGAAGGGATTGGCCAAATTGAGCAGTGATGATAAGGAACTTAAGTGTCGGAATTGCTCGATGACATTCATGTCCAAGAAGCTTTTGATGAAGCACATGGACTCTCATGAGCGAACCAAGTACAGGTGTAAGCTCTGCACCCAGGAGTTCACCAAGAAAGATCACCTTCGAGCTCACCTGGAGCAACACGCGCGGATGAAGTCCTTCAAGTGCACCGAGTGCAACAAAGTGTTTGGCAATGAGTTGACCCTGCGTAACCATCTGATTGCAACAAATCACAAAACAATGGTTCAGGGCCAAGAATACGATCCCAATAAAAGGATAAAACGAGTAGCGGCTAAAGCTGCGCAAAAGATAATCGACAAGATAAAAACAGAGGATGGTTTCGAGGACTCTGCTGGCGACGATTCTGACGAATTTGGTGAATTGGGGGATAAGTTGGGAAGGCGCAGTAGGAGAGACCTGGAGTGTGCCACTTGTGGGAAACACTGTATTTCTAAACAGCATCTTATGCGACACACGGAGTTGCATTCAAAGGACGAGAAGCCAGATGTAAATCAACCGAAAATAAAGGCAGAAAGCTCTTTCCAAAGAACCTGTGGCGTTGGATTTGACCGAGAATTCGATGACAACTCTGAGGATGATTTTGAGAGTGGATTGGATTGGCCAATGGACACACATGAATGTATCACCTGTAAAAAGCGTTACAGCACTAAAAAGTCATTGTTGCGTCATCAGTTGCTGCACGAGGAGCCCAATTACGAGTGCGACATCTGCAATGTGAAGTTCTATCGTAAAGATAAACTGAAAGCACATTATGATAAGTGCTCGGAGAAAAATCCGGATCAGGTGAGGAAATGCAACATCTGCGGTGATACCTTTGAGAATAACGAAATTTTGAAGGAGCATCGGTCGAAGCATGTCGATGAGGGTATTCTCACTGAGGAGGACCTGAGGGAATTGGACCCAGAGGATCGTAGATCCGGTGAAAAGACCGCAAGGAAACGACGGACAGATATCGTCGGACTCGAATGCACGGAATGCAATAAGCAATACACATCGCGCAAGGGCTTACTGAGGCACATTCAGGTGCACGAGGGCAAGAAATACCTGTGTGACATTTGTCCAAAGAAATTTTACAGGCGTGAACACCTGAAAATTCACGTAGCAAAACACAACATGGTGAAGCCCTACAAGTGCACAAAGTGCTCCAAGCGCTTCATCAAGGAGGAGCAATTAGCAGCTCACCTAACGAAGCACGAGAGGACATTTAAAAAGAGCAAAGAAACCGATTCTACATCAAAAAGATTTCTCTGTGAAATATGCTCGAAGAGCTTTACACAATCAACAACTTTAGTAGCTCATCTTAGGGCACATAATGGAATTAAGCCTTATGTCTGTGAAGTTTGTGCTAGGCCTTTCACCACCAATGCTTATCTAAAAATGCACATGAGAACACACACACAGGAGAGGCCATACAGTTGTCAATACTGTTCGAGAGCTTTTGCCAGGGCAGATACCCTGGCCAATCACCTCACCTCTCACACAGGCGAGGCTAAATACCACTGTAAATATTGTCCTAAAAATTTTAGAAGATTGAAATCATTGAAGGAGCACGTGTTCATTCATACAGGACAAAGGCCTTATGCCTGTCCCACTTGTGATCGAAGATTTAATAATAATGGAAGCAGATACGCACATTCGAAGAGGTGCCAGCAGAATTTGGTGCAGGGTAGGCAGGCTCAATTGCAAGCGCAACCTCAAGCTGAAGAGATTCAGGTGGTTGTTGGTGAACAGGAGGACTCGGGACAGCACGTGATGGTTCATCAGATTCAAGCTGTACAGCAAGTCCAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACAAATTCAACAGCAAAGTCAAGGACATACAATCAGACTTGCACAGGCAGTTGGACCTGCTATGCAAGTTGTGCAGAGTAAAAATATCAAGACCATTACGATTACAAGGGAACCTGATCAGGGACATCAGGTGCTGCATCATCCGGAAATTCTTATGCCATTGATTCTACCGCTTACGGTGACACTAGCAGATGTAGAGGAGGAAGTGATACTCCCTGAGGGAACCAAGATCTTTACAACTGCGTAG
- Protein Sequence
- MDAVGIDTSEPSQDEEPVESAVGICRICLHGNPMMRDLFANDEVVALSTKVMSFTNVKMIPGDGLPSQVCCDCTEKLDSAYEFKLQVEQADNVLRERYDNLNIKEELFFNEVEVHLDNERHEDSDSGGNGHYETEALSVPCPVEKSSLFKDHLALLEVQKLAEREQVALDHSSLIRAPAELTATEESLQSLDHQEDYLHEATQSPPPQILLSTEDSVKREKLTTIDMPIDEHNYMVQQGYTLTNDQQQQLFDPEELEAAEDEAHEHGLADQQQDEQALHLELEGQSQDFTEASQESAEPQALEAQSQFILTEPPASKRTPQDSDVNSDEDNYFENLNLSSRLKQFSEDKLDKIFFMCYICDRKFVSKESLKEHMHSHEEVRKTLSLKKTPEKSLKMPSSVKSQPSGKKSNKCPYCGKEYLYVISYNKHIKQHEKNADELKRGATGEESDSDGLENVDGFEVIQDRPDSPDSDFSNAMKSEEQEGGIFRCPKCHEKFPSKTDLQRHTLHHNQNETGRCNICSLEFDSLEKLKDHRSTHVMEGVMNEKDLRDELSNICSKEYQEKGLAKLSSDDKELKCRNCSMTFMSKKLLMKHMDSHERTKYRCKLCTQEFTKKDHLRAHLEQHARMKSFKCTECNKVFGNELTLRNHLIATNHKTMVQGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGFEDSAGDDSDEFGELGDKLGRRSRRDLECATCGKHCISKQHLMRHTELHSKDEKPDVNQPKIKAESSFQRTCGVGFDREFDDNSEDDFESGLDWPMDTHECITCKKRYSTKKSLLRHQLLHEEPNYECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRSKHVDEGILTEEDLRELDPEDRRSGEKTARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTKCSKRFIKEEQLAAHLTKHERTFKKSKETDSTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCQQNLVQGRQAQLQAQPQAEEIQVVVGEQEDSGQHVMVHQIQAVQQVQQIXXXXXXXXXXXXXXXXXXXXXXXVQIQQQSQGHTIRLAQAVGPAMQVVQSKNIKTITITREPDQGHQVLHHPEILMPLILPLTVTLADVEEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -